BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645839|ref|NP_208017.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(130 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylo... 25 2.9
pdb|1DLF|H Chain H, High Resolution Crystal Structure Of Th... 24 4.9
pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcal... 24 4.9
pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Al... 24 4.9
pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Al... 24 4.9
pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrit... 24 4.9
pdb|1BQ5| Nitrite Reductase From Alcaligenes Xylosoxidans... 24 4.9
pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida... 23 8.3
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 25.0 bits (53), Expect = 2.9
Identities = 16/60 (26%), Positives = 26/60 (42%), Gaps = 11/60 (18%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDD 66
W GG+ G++L F P + N+I F +G GH++V+ + DD
Sbjct: 275 WFIRGGSAGAALYTF---KQPGVYAYLNH--------NLIEAFELGAAGHISVEGKWNDD 323
>pdb|1DLF|H Chain H, High Resolution Crystal Structure Of The Fv Fragment From
An Anti-Dansyl Switch Variant Antibody Igg2a(S)
Crystallized At Ph 5.25
pdb|2DLF|H Chain H, High Resolution Crystal Structure Of The Fv Fragment From
An Anti-Dansyl Switch Variant Antibody Igg2a(S)
Crystallized At Ph 6.75
Length = 124
Score = 24.3 bits (51), Expect = 4.9
Identities = 10/35 (28%), Positives = 20/35 (56%)
Query: 56 HLAVKKVFGDDFGIFFVTGVLGGFTTFSSYGLDTL 90
+L + + +D GI++ TG+ + F+ +G TL
Sbjct: 82 YLQMNTLRAEDTGIYYCTGIYYHYPWFAYWGQGTL 116
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDD 66
W GG+ G++L F P + N+I F +G GH+ V+ + DD
Sbjct: 275 WFIRGGSAGAALYTF---KQPGVYAYLNH--------NLIEAFELGAAGHIKVEGKWNDD 323
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDD 66
W GG+ G++L F P + N+I F +G GH+ V+ + DD
Sbjct: 275 WFIRGGSAGAALYTF---KQPGVYAYLNH--------NLIEAFELGAAGHIKVEGKWNDD 323
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDD 66
W GG+ G++L F P + N+I F +G GH+ V+ + DD
Sbjct: 275 WFIRGGSAGAALYTF---KQPGVYAYLNH--------NLIEAFELGAAGHIKVEGKWNDD 323
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
Length = 336
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDD 66
W GG+ G++L F P + N+I F +G GH+ V+ + DD
Sbjct: 275 WFIRGGSAGAALYTF---KQPGVYAYLNH--------NLIEAFELGAAGHIKVEGKWNDD 323
>pdb|1BQ5| Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDD 66
W GG+ G++L F P + N+I F +G GH+ V+ + DD
Sbjct: 281 WFIRGGSAGAALYTF---KQPGVYAYLNH--------NLIEAFELGAAGHIKVEGKWNDD 329
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase E1b)
Length = 407
Score = 23.5 bits (49), Expect = 8.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 96 SQYIEAVSYALGTNILGLTGVAIGW 120
+Q+++AV +A + I G T +A W
Sbjct: 185 TQFVQAVGWAXASAIKGDTKIASAW 209
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.331 0.148 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 745,213
Number of Sequences: 13198
Number of extensions: 28560
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 8
length of query: 130
length of database: 2,899,336
effective HSP length: 78
effective length of query: 52
effective length of database: 1,869,892
effective search space: 97234384
effective search space used: 97234384
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)