BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645841|ref|NP_208019.1| cytochrome c553
[Helicobacter pylori 26695]
(96 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DVH| Cytochrome C553 (Reduced) (Nmr, 36 Structures) 53 6e-09
pdb|2DVH| The Y64a Mutant Of Cytochrome C553 From Desulfo... 53 6e-09
pdb|1C53| Cytochrome C553 50 3e-08
pdb|1CNO|G Chain G, Structure Of Pseudomonas Nautica Cytoch... 35 0.001
pdb|1ETP|A Chain A, Crystal Structure Of Cytochrome C4 From... 35 0.001
pdb|1FCD|C Chain C, Flavocytochrome C Sulfide Dehydrogenase... 32 0.015
pdb|1CYJ| Cytochrome C6 >gi|1310884|pdb|1CYI| Cytochrome C6 31 0.019
pdb|1C6S| The Solution Structure Of Cytochrome C6 From Th... 31 0.025
pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From... 27 0.28
pdb|1CCH| Cytochrome C551 (Nmr, Minimized Average Structure) 27 0.28
pdb|1FI3|A Chain A, Solution Structure Of The M61h Mutant O... 27 0.36
pdb|1AYG| Solution Structure Of Cytochrome C-552, Nmr, 20... 27 0.36
pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near ... 27 0.47
pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1 27 0.47
pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidi... 27 0.47
pdb|1SCM|C Chain C, Myosin (Regulatory Domain) 27 0.47
pdb|1A56| Primary Sequence And Solution Conformation Of F... 27 0.47
pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vu... 27 0.47
pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Act... 27 0.47
pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduc... 27 0.47
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Confor... 27 0.47
pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxi... 26 0.62
pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Lik... 25 1.8
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 25 1.8
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 25 1.8
pdb|1BU3| Refined Crystal Structure Of Calcium-Bound Silv... 25 1.8
pdb|1DVV|A Chain A, Solution Structure Of The Quintuple Mut... 23 5.2
pdb|1CC5| Cytochrome C5 (Oxidized) 23 6.8
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 23 6.8
pdb|1MRP| Ferric-Binding Protein From Haemophilus Influen... 23 6.8
pdb|1A75|A Chain A, Whiting Parvalbumin 22 8.9
pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calm... 22 8.9
pdb|1AHR| Calmodulin Mutant With A Two Residue Deletion I... 22 8.9
pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune ... 22 8.9
pdb|1A75|B Chain B, Whiting Parvalbumin 22 8.9
pdb|4CLN| Calmodulin >gi|494737|pdb|2BBM|A Chain A, Calmo... 22 8.9
>pdb|1DVH| Cytochrome C553 (Reduced) (Nmr, 36 Structures)
Length = 79
Score = 52.8 bits (125), Expect = 6e-09
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 21 DVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGA---NKNPIMSAQA 77
D AL KSC CHG K A+G +K V E+ K + + G+ + +M+
Sbjct: 2 DGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADGSYGGERKAMMTNAV 61
Query: 78 KKLSDEDIKALAKYIPTL 95
KK SDE++KALA Y+ L
Sbjct: 62 KKYSDEELKALADYMSKL 79
>pdb|2DVH| The Y64a Mutant Of Cytochrome C553 From Desulfovibrio Vulgaris
Hildenborough, Nmr, 39 Structures
Length = 79
Score = 52.8 bits (125), Expect = 6e-09
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 21 DVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGA---NKNPIMSAQA 77
D AL KSC CHG K A+G +K V E+ K + + G+ + +M+
Sbjct: 2 DGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADGSYGGERKAMMTNAV 61
Query: 78 KKLSDEDIKALAKYIPTL 95
KK SDE++KALA Y+ L
Sbjct: 62 KKASDEELKALADYMSKL 79
>pdb|1C53| Cytochrome C553
Length = 79
Score = 50.4 bits (119), Expect = 3e-08
Identities = 28/78 (35%), Positives = 40/78 (50%), Gaps = 3/78 (3%)
Query: 21 DVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGA---NKNPIMSAQA 77
D AL KSC CHG K+A+G V E+ K L + G+ K +M+
Sbjct: 2 DGAALYKSCVGCHGADGSKQAMGVGHAVKGQKADELFKKLKGYADGSYGGEKKAVMTNLV 61
Query: 78 KKLSDEDIKALAKYIPTL 95
K+ SDE++KA+A Y+ L
Sbjct: 62 KRYSDEEMKAMADYMSKL 79
>pdb|1CNO|G Chain G, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|A Chain A, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|B Chain B, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|C Chain C, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|D Chain D, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|E Chain E, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|F Chain F, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
pdb|1CNO|H Chain H, Structure Of Pseudomonas Nautica Cytochrome C552, By Mad
Method
Length = 87
Score = 35.4 bits (80), Expect = 0.001
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 23 KALAKSCAACHGVKFEKKALGKSKIV-NMMSEAE--IEKDLMDFKSGANKN---PIMSAQ 76
KA A CAACHG + + + I N+ + E + L +K+G + P+M Q
Sbjct: 8 KAKAAVCAACHG----QNGISQVPIYPNLAGQKEQYLVAALKAYKAGQRQGGQAPVMQGQ 63
Query: 77 AKKLSDEDIKALAKY 91
A LSD DI LA Y
Sbjct: 64 ATALSDADIANLAAY 78
>pdb|1ETP|A Chain A, Crystal Structure Of Cytochrome C4 From Pseudomonas
Stutzeri
pdb|1ETP|B Chain B, Crystal Structure Of Cytochrome C4 From Pseudomonas
Stutzeri
Length = 190
Score = 35.0 bits (79), Expect = 0.001
Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 4/72 (5%)
Query: 28 SCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNP----IMSAQAKKLSDE 83
+C CH L + A K L DF+ G N IM A KLS++
Sbjct: 118 ACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNK 177
Query: 84 DIKALAKYIPTL 95
DI+AL+ YI L
Sbjct: 178 DIEALSSYIQGL 189
>pdb|1FCD|C Chain C, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
pdb|1FCD|D Chain D, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
Length = 174
Score = 31.6 bits (70), Expect = 0.015
Identities = 21/67 (31%), Positives = 27/67 (39%), Gaps = 1/67 (1%)
Query: 25 LAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNPIMSAQAKKLSDED 84
L +CA CHG I M +E + FKSG + IM AK S D
Sbjct: 7 LTNNCAGCHGTHGNSVGPASPSIAQMDPMVFVEV-MEGFKSGEIASTIMGRIAKGYSTAD 65
Query: 85 IKALAKY 91
+ +A Y
Sbjct: 66 FEKMAGY 72
>pdb|1CYJ| Cytochrome C6
pdb|1CYI| Cytochrome C6
Length = 90
Score = 31.2 bits (69), Expect = 0.019
Identities = 21/80 (26%), Positives = 40/80 (49%), Gaps = 8/80 (10%)
Query: 18 MATDVKALAKSCAACH----GVKFEKKALGKSKIVNMMSEA-EIEKDLMDFKSGANKNPI 72
+A + +CAACH +K L K+ + + ++E + ++G P
Sbjct: 3 LALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMP- 61
Query: 73 MSAQAKKLSDEDIKALAKYI 92
A A +LS+E+I+A+A+Y+
Sbjct: 62 --AWADRLSEEEIQAVAEYV 79
>pdb|1C6S| The Solution Structure Of Cytochrome C6 From The Thermophilic
Cyanobacterium Synechococcus Elongatus, Nmr, 20
Structures
Length = 87
Score = 30.8 bits (68), Expect = 0.025
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 18 MATDVKALAKSCAACH----GVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNPIM 73
+A K + +CAACH V K L K + +E D + ++ KN M
Sbjct: 3 LANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSE---DAIIYQVQHGKN-AM 58
Query: 74 SAQAKKLSDEDIKALAKYI 92
A A +L+DE I+ +A Y+
Sbjct: 59 PAFAGRLTDEQIQDVAAYV 77
>pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From Red Alga
Porphyra Yezoensis At 1.57 A Resolution
Length = 85
Score = 27.3 bits (59), Expect = 0.28
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 23 KALAKSCAACHG----VKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNPIMSAQAK 78
K + +CAACH K L K ++ S I+ ++G N P
Sbjct: 8 KVFSANCAACHAGGNNAIMPDKTL-KKDVLEANSMNTIDAITYQVQNGKNAMPAFGG--- 63
Query: 79 KLSDEDIKALAKYI 92
+L DEDI+ A Y+
Sbjct: 64 RLVDEDIEDAANYV 77
>pdb|1CCH| Cytochrome C551 (Nmr, Minimized Average Structure)
Length = 82
Score = 27.3 bits (59), Expect = 0.28
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 21 DVKALAKS--CAACHGV--KFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANK--NPIMS 74
D +AL KS CAACH V K AL + N E + + K+G+ PI
Sbjct: 2 DGEALFKSKPCAACHSVDTKMVGPALKEVAAKNAGVEGAADTLALHIKNGSQGVWGPI-P 60
Query: 75 AQAKKLSDEDIKALAKYIPTLK 96
+++E+ K LA+++ +LK
Sbjct: 61 MPPNPVTEEEAKILAEWVLSLK 82
>pdb|1FI3|A Chain A, Solution Structure Of The M61h Mutant Of Pseudomonas
Stutzeri Substrain Zobell Ferrocytochrome C-551
Length = 82
Score = 26.9 bits (58), Expect = 0.36
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 21 DVKALAKS--CAACHGV--KFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANK--NPIMS 74
D +AL KS CAACH V K AL + N E + + K+G+ PI
Sbjct: 2 DGEALFKSKPCAACHSVDTKMVGPALKEVAAKNAGVEGAADTLALHIKNGSQGVWGPI-P 60
Query: 75 AQAKKLSDEDIKALAKYIPTLK 96
+++E+ K LA+++ +LK
Sbjct: 61 HPPNPVTEEEAKILAEWVLSLK 82
>pdb|1AYG| Solution Structure Of Cytochrome C-552, Nmr, 20 Structures
Length = 80
Score = 26.9 bits (58), Expect = 0.36
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 24 ALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDF------KSGANKNPIMSAQA 77
A K C ACH +K +K + + + KD +D+ K G+ +
Sbjct: 5 AKQKGCMACHDLKAKKVGPAYADVAKKYAG---RKDAVDYLAGKIKKGGSGVWGSVPMPP 61
Query: 78 KKLSDEDIKALAKYIPTLK 96
+ ++D + K LA++I ++K
Sbjct: 62 QNVTDAEAKQLAQWILSIK 80
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 26.6 bits (57), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+++ F SGA +++A ++LSDED+ + K
Sbjct: 92 DREGQGFISGAELRHVLTALGERLSDEDVDEIIK 125
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 26.6 bits (57), Expect = 0.47
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 29 CAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGAN---KNPIMSAQAKKLSDED 84
C +C+G K+ K GK +S + E + ++ G + NP S A+K+ D
Sbjct: 58 CKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD 116
>pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1QKS|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOM|B Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOM|A Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
Length = 567
Score = 26.6 bits (57), Expect = 0.47
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 9 GVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGAN 68
GV A ++A K + CA CHGV K A GK+ ++ + + L F + A+
Sbjct: 45 GVTALSDAQYNEANKIYFERCAGCHGV-LRKGATGKALTPDLTRDLGFDY-LQSFITYAS 102
Query: 69 KNPIMS-AQAKKLSDEDIKALAKYI 92
+ + + +LS E + +A Y+
Sbjct: 103 PAGMPNWGTSGELSAEQVDLMANYL 127
>pdb|1SCM|C Chain C, Myosin (Regulatory Domain)
Length = 149
Score = 26.6 bits (57), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+++ F SGA +++A ++LSDED+ + K
Sbjct: 91 DREGQGFISGAELRHVLTALGERLSDEDVDEIIK 124
>pdb|1A56| Primary Sequence And Solution Conformation Of Ferricytochrome
C-552 From Nitrosomonas Europaea, Nmr, Mean Structure
Refined With Explicit Hydrogen Bond Constraints
pdb|1A8C| Primary Sequence And Solution Conformation Of Ferrocytochrome
C-552 From Nitrosomonas Europaea, Nmr, Mean Structure
Refined Without Hydrogen Bond Constraints
Length = 81
Score = 26.6 bits (57), Expect = 0.47
Identities = 23/80 (28%), Positives = 37/80 (45%), Gaps = 10/80 (12%)
Query: 24 ALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNPIMSAQAK----- 78
A +C ACH V E K +G + + ++ ++ + D + +G K +
Sbjct: 5 AKKNNCIACHQV--ETKVVGPA-LKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPP 61
Query: 79 --KLSDEDIKALAKYIPTLK 96
+SD D KALA +I TLK
Sbjct: 62 NVNVSDADAKALADWILTLK 81
>pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|B Chain B, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|C Chain C, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|D Chain D, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
Length = 514
Score = 26.6 bits (57), Expect = 0.47
Identities = 13/32 (40%), Positives = 17/32 (52%)
Query: 11 LAFANALMATDVKALAKSCAACHGVKFEKKAL 42
+AF + T V + K CAACH K K +L
Sbjct: 31 VAFRHDQHTTAVTGMGKDCAACHKSKDGKMSL 62
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 26.6 bits (57), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+++ F SGA +++A ++LSDED+ + K
Sbjct: 94 DREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127
>pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
pdb|1E2R|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
Length = 567
Score = 26.6 bits (57), Expect = 0.47
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 9 GVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGAN 68
GV A ++A K + CA CHGV K A GK+ ++ + + L F + A+
Sbjct: 45 GVTALSDAQYNEANKIYFERCAGCHGV-LRKGATGKALTPDLTRDLGFDY-LQSFITYAS 102
Query: 69 KNPIMS-AQAKKLSDEDIKALAKYI 92
+ + + +LS E + +A Y+
Sbjct: 103 PAGMPNWGTSGELSAEQVDLMANYL 127
>pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
Length = 156
Score = 26.6 bits (57), Expect = 0.47
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+++ F SGA +++A ++LSDED+ + K
Sbjct: 94 DREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127
>pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ5|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ4|A Chain A, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ3|A Chain A, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ3|B Chain B, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ4|B Chain B, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1DY7|B Chain B, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1H9X|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1HCM|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1H9X|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1HCM|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1H9Y|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1H9Y|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1DY7|A Chain A, Cytochrome Cd1 Nitrite Reductase, Co Complex
Length = 567
Score = 26.2 bits (56), Expect = 0.62
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 9 GVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGAN 68
GV A ++A K + CA CHGV K A GK+ ++ + + G+
Sbjct: 45 GVSALSDAQYNEANKIYFERCAGCHGV-LRKGATGKALTPDLTRDLGFDYLQSFITYGSP 103
Query: 69 KNPIMSAQAKKLSDEDIKALAKYI 92
+ +LS E + +A Y+
Sbjct: 104 AGMPNWGTSGELSAEQVDLMANYL 127
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 24.6 bits (52), Expect = 1.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAKYIPT 94
+KD F S A +M+ +KLSDE++ + + T
Sbjct: 93 DKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADT 130
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 24.6 bits (52), Expect = 1.8
Identities = 10/43 (23%), Positives = 25/43 (57%)
Query: 53 EAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAKYIPTL 95
+AE+ + L++F G+++ + + + ++DE I L+ + L
Sbjct: 232 KAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEKL 274
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 24.6 bits (52), Expect = 1.8
Identities = 10/43 (23%), Positives = 25/43 (57%)
Query: 53 EAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAKYIPTL 95
+AE+ + L++F G+++ + + + ++DE I L+ + L
Sbjct: 232 KAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEKL 274
>pdb|1BU3| Refined Crystal Structure Of Calcium-Bound Silver Hake (Pi 4.2)
Parvalbumin At 1.65 A
Length = 109
Score = 24.6 bits (52), Expect = 1.8
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 12 AFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLM---DFKSGAN 68
AF+ L DV A K+C A F KA + S +I+K KSG
Sbjct: 2 AFSGILADADVAAALKACEAAD--SFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFI 59
Query: 69 KN-------PIMSAQAKKLSDEDIKALAK 90
+ + SA A+ L+D + KA K
Sbjct: 60 EEDELKLFLQVFSAGARALTDAETKAFLK 88
>pdb|1DVV|A Chain A, Solution Structure Of The Quintuple Mutant Of Cytochrome
C- 551 From Pseudomonas Aeruginosa
Length = 82
Score = 23.1 bits (48), Expect = 5.2
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 9/82 (10%)
Query: 21 DVKALAKSCAACHGVKFEKKALG---KSKIVNMMSEAEIEKDLMD-FKSGANK--NPIMS 74
+V A K C ACH + + K +G K +A E L K+G+ PI
Sbjct: 4 EVLAKNKGCMACHAI--DTKMVGPAYKDVAAKYAGQAGAEAYLAQRIKNGSQGVWGPI-P 60
Query: 75 AQAKKLSDEDIKALAKYIPTLK 96
+SD++ + LAK+I + K
Sbjct: 61 MPPNAVSDDEAQTLAKWILSQK 82
>pdb|1CC5| Cytochrome C5 (Oxidized)
Length = 83
Score = 22.7 bits (47), Expect = 6.8
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 25 LAKSCAACHGV-KFEKKALGKSKIVNMMSEAE--IEKDLMDFKSGANKNPIMSAQAKKLS 81
+AK C ACHG +G S ++A+ ++ L SG N P A S
Sbjct: 11 VAKYCNACHGTGLLNAPKVGDSAAWKTRADAKGGLDGLLAQSLSGLNAMPPKGTCA-DCS 69
Query: 82 DEDIKA 87
D+++KA
Sbjct: 70 DDELKA 75
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 22.7 bits (47), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 66 GANKNPIMSAQAKKLSDEDIKA 87
GA NP + +A K S E+IKA
Sbjct: 96 GAGGNPKIGEEAAKESAEEIKA 117
>pdb|1MRP| Ferric-Binding Protein From Haemophilus Influenzae
pdb|1D9V|A Chain A, Haemophilus Influenzae Ferric-Binding Protein Apo Form
Length = 309
Score = 22.7 bits (47), Expect = 6.8
Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 43 GKSKIV----NMMSEAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
G+S++V +SE ++EK ++D+ + K I E + AL+K
Sbjct: 100 GRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSK 151
>pdb|1A75|A Chain A, Whiting Parvalbumin
Length = 108
Score = 22.3 bits (46), Expect = 8.9
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 12 AFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLM---DFKSGAN 68
AFA L D A K+C A F KA ++ S +I+K + KSG
Sbjct: 1 AFAGILADADCAAAVKACEAAD--SFSYKAFFAKCGLSGKSADDIKKAFVFIDQDKSGFI 58
Query: 69 KN-------PIMSAQAKKLSDEDIKALAK 90
+ + A A+ L+D + KA K
Sbjct: 59 EEDELKLFLQVFKAGARALTDAETKAFLK 87
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 22.3 bits (46), Expect = 8.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+KD F S A +M+ +KL+DE++ + +
Sbjct: 93 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 126
>pdb|1AHR| Calmodulin Mutant With A Two Residue Deletion In The Central Helix
Length = 146
Score = 22.3 bits (46), Expect = 8.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+KD F S A +M+ +KL+DE++ + +
Sbjct: 91 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 124
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 22.3 bits (46), Expect = 8.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 51 MSEAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAKYIPTLK 96
+S A+ D+ DF P + ++ ED+ + KY+ T K
Sbjct: 139 LSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
>pdb|1A75|B Chain B, Whiting Parvalbumin
Length = 109
Score = 22.3 bits (46), Expect = 8.9
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 12 AFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLM---DFKSGAN 68
AFA L D A K+C A F KA ++ S +I+K + KSG
Sbjct: 2 AFAGILADADCAAAVKACEAAD--SFSYKAFFAKCGLSGKSADDIKKAFVFIDQDKSGFI 59
Query: 69 KN-------PIMSAQAKKLSDEDIKALAK 90
+ + A A+ L+D + KA K
Sbjct: 60 EEDELKLFLQVFKAGARALTDAETKAFLK 88
>pdb|4CLN| Calmodulin
pdb|2BBM|A Chain A, Calmodulin (Calcium-Bound) Complexed With Rabbit Skeletal
Myosin Light Chain Kinase (Calmodulin-Binding Domain)
(Nmr, Minimized Average Structure)
pdb|2BBN|A Chain A, Calmodulin (Calcium-Bound) Complexed With Rabbit Skeletal
Myosin Light Chain Kinase (Calmodulin-Binding Domain)
(Nmr, 21 Structures)
Length = 148
Score = 22.3 bits (46), Expect = 8.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 57 EKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAK 90
+KD F S A +M+ +KL+DE++ + +
Sbjct: 93 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 126
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,310
Number of Sequences: 13198
Number of extensions: 14100
Number of successful extensions: 76
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 38
length of query: 96
length of database: 2,899,336
effective HSP length: 72
effective length of query: 24
effective length of database: 1,949,080
effective search space: 46777920
effective search space used: 46777920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)