BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645844|ref|NP_208022.1| hypothetical protein
[Helicobacter pylori 26695]
(180 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1VHP| Vh-P8, Nmr 27 1.1
pdb|2H1P|H Chain H, The Three-Dimensional Structures Of A P... 27 1.8
pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.... 25 5.2
pdb|1LO0|Y Chain Y, Catalytic Retro-Diels-Alderase Transiti... 25 6.8
pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core... 25 6.8
pdb|1CSP| Major Cold Shock Protein (Cspb) 25 6.8
pdb|1NMF| Major Cold-Shock Protein, Nmr, 20 Structures >g... 25 6.8
pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylor... 24 8.9
pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose... 24 8.9
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphogluc... 24 8.9
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbi... 24 8.9
pdb|1HU8|A Chain A, Crystal Structure Of The Mouse P53 Core... 24 8.9
pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylor... 24 8.9
pdb|1G7Y|D Chain D, The Crystal Structure Of The 58kd Veget... 24 8.9
>pdb|1VHP| Vh-P8, Nmr
Length = 117
Score = 27.3 bits (59), Expect = 1.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 47 GGSLLVSADSSRHWFLNYILSNLNPKDLKERPLLSVIDFNASSFY 91
GGSL +S +S F +Y +S + KER ++S + + S Y
Sbjct: 15 GGSLRLSCAASGFTFSSYAMSWVRQAPGKEREIVSAVSGSGGSTY 59
>pdb|2H1P|H Chain H, The Three-Dimensional Structures Of A Polysaccharide
Binding Antibody To Cryptococcus Neoformans And Its
Complex With A Peptide From A Phage Display Library:
Implications For The Identification Of Peptide Mimotopes
Length = 220
Score = 26.6 bits (57), Expect = 1.8
Identities = 20/87 (22%), Positives = 36/87 (40%)
Query: 35 KLIAQTISHVLNGGSLLVSADSSRHWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKN 94
KL+ V GGSL +S +S F +Y LS + K L++ I+ N Y +
Sbjct: 3 KLVESGGGLVKLGGSLKLSCAASGFTFSSYFLSWVRQTPEKRLELVATINSNGDKTYHPD 62
Query: 95 DANLSLATIEMTYQNPMFWHVGKIENE 121
+N ++ + +++E
Sbjct: 63 TMKGRFTISRDNAKNTLYLQMSSLKSE 89
>pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
Length = 215
Score = 25.0 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 8 IKEFVRDQGEFIAQQSGWLELE 29
+KE V+D+G FI Q+ L LE
Sbjct: 19 VKEMVKDRGYFITQEEVELPLE 40
>pdb|1LO0|Y Chain Y, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO0|H Chain H, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO2|Y Chain Y, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO2|H Chain H, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO3|Y Chain Y, Retro-Diels-Alderase Catalytic Antibody: Product
Analogue
pdb|1LO3|H Chain H, Retro-Diels-Alderase Catalytic Antibody: Product
Analogue
Length = 220
Score = 24.6 bits (52), Expect = 6.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 35 KLIAQTISHVLNGGSLLVSADSSRHWFLNYILSNLNPKDLKERPLLSVIDFNASSFYP 92
KL+ V GGSL +S +S F NY +S + K ++ I + +YP
Sbjct: 3 KLVESGGGLVKPGGSLKLSCAASGFSFRNYGMSWVRQTPEKRLEWVASISYGGLIYYP 60
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 24.6 bits (52), Expect = 6.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 121 EGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNK 177
+ + I L+K+ + L + E+ L E ++ + + F LFE+ L SVLY K
Sbjct: 82 QAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAK 138
>pdb|1CSP| Major Cold Shock Protein (Cspb)
Length = 67
Score = 24.6 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 103 IEMTYQNPMFWHVGKIENEGLKTILLSKIPSF 134
IE+ Q+ +F H I+ EG KT+ + SF
Sbjct: 18 IEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSF 49
>pdb|1NMF| Major Cold-Shock Protein, Nmr, 20 Structures
pdb|1NMG| Major Cold-Shock Protein, Nmr, Minimized Average Structure
pdb|1CSQ| Major Cold Shock Protein (Cspb)
Length = 67
Score = 24.6 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 103 IEMTYQNPMFWHVGKIENEGLKTILLSKIPSF 134
IE+ Q+ +F H I+ EG KT+ + SF
Sbjct: 18 IEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSF 49
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 24.3 bits (51), Expect = 8.9
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 95 DANLSLATIEMTYQNPMFWHVGK 117
DAN S+ T + Y MF H GK
Sbjct: 462 DANASIPTPQPVYYREMFAHHGK 484
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 35 KLIAQTISHVLNGGSLLVSADSSRHWFLNYI 65
K +A+ I L+G S + S DSS + +N+I
Sbjct: 518 KQLAKKIEPELDGSSPVTSHDSSTNGLINFI 548
>pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
Length = 557
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 35 KLIAQTISHVLNGGSLLVSADSSRHWFLNYI 65
K +A+ I L+G S + S DSS + +N+I
Sbjct: 518 KQLAKKIEPELDGSSPVTSHDSSTNGLINFI 548
>pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose 6-
Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose 6-
Phosphate Isomerase (No Ligand Bound)
pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
Length = 558
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 35 KLIAQTISHVLNGGSLLVSADSSRHWFLNYI 65
K +A+ I L+G S + S DSS + +N+I
Sbjct: 519 KQLAKKIEPELDGSSPVTSHDSSTNGLINFI 549
>pdb|1HU8|A Chain A, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain
At 2.7a Resolution
pdb|1HU8|B Chain B, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain
At 2.7a Resolution
pdb|1HU8|C Chain C, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain
At 2.7a Resolution
Length = 186
Score = 24.3 bits (51), Expect = 8.9
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 106 TYQNPMFWHVGKIENEGLKTILLSKIPSFLWLFEELKEDC 145
TYQ +H+G +++ K+++ + P LF +L + C
Sbjct: 1 TYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTC 40
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 24.3 bits (51), Expect = 8.9
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 95 DANLSLATIEMTYQNPMFWHVGK 117
DAN S+ T + Y MF H GK
Sbjct: 462 DANASIPTPQPVYYREMFAHHGK 484
>pdb|1G7Y|D Chain D, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|C Chain C, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|A Chain A, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|F Chain F, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|E Chain E, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|B Chain B, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1LUL|B Chain B, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|C Chain C, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|E Chain E, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|D Chain D, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|F Chain F, Db58, A Legume Lectin From Dolichos Biflorus
Length = 253
Score = 24.3 bits (51), Expect = 8.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 84 DFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIENEGLKTI 126
+FN+SSF + DA +S + + +T K++ GL T+
Sbjct: 10 NFNSSSFILQGDATVSSSKLRLT----------KVKGNGLPTL 42
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,028,014
Number of Sequences: 13198
Number of extensions: 38700
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)