BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644754|ref|NP_206924.1| translation initiation
factor IF-3 (infC) [Helicobacter pylori 26695]
(203 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TIF| Translation Initiation Factor 3 N-Terminal Domain 84 1e-17
pdb|1TIG| Translation Initiation Factor 3 C-Terminal Domain 65 7e-12
pdb|2IFE|A Chain A, Translation Initiation Factor If3 From ... 61 8e-11
pdb|1I96|V Chain V, Crystal Structure Of The 30s Ribosomal ... 53 3e-08
pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escher... 28 0.74
pdb|1GSJ|A Chain A, Selenomethionine Substituted N-Acetyl-L... 28 0.74
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 27 1.3
pdb|1RAA|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.... 27 1.6
pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate ... 27 1.6
pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate... 27 1.6
pdb|9ATC|A Chain A, Atcase Y165f Mutant 27 1.6
pdb|1ACM|A Chain A, Aspartate Carbamoyltransferase (Asparta... 27 1.6
pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E.... 27 1.6
pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed W... 27 1.6
pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Tri... 27 1.6
pdb|1HLV|A Chain A, Crystal Structure Of Cenp-B(1-129) Comp... 27 2.1
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal ... 26 2.8
pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Sub... 26 3.7
pdb|1JFK|A Chain A, Minimum Energy Representative Structure... 26 3.7
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 25 6.2
pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta... 25 6.2
pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Syn... 25 8.2
>pdb|1TIF| Translation Initiation Factor 3 N-Terminal Domain
Length = 78
Score = 83.6 bits (205), Expect = 1e-17
Identities = 38/75 (50%), Positives = 54/75 (71%)
Query: 5 EVLLNGDINFKEVRCVGDNGEVYGIISSKEALHIAQNLGLDLVLISASAKPPVCKVMDYN 64
+ ++N I +EVR + NG+ GI S +EAL IA LDLVL++ +AKPPVC++MDY
Sbjct: 4 DFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG 63
Query: 65 KFRYQNEKKIKEAKK 79
KFR++ +KK KEA+K
Sbjct: 64 KFRFEQQKKEKEARK 78
>pdb|1TIG| Translation Initiation Factor 3 C-Terminal Domain
Length = 94
Score = 64.7 bits (156), Expect = 7e-12
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 80 KQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLF 139
KQK I +KE++LS I ++D N K+++AR+F+E VK + KGR + + G VL
Sbjct: 1 KQKVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLD 60
Query: 140 RVQTMMQDLANPEKEPKTEGRFVSWMFVPK 169
R+ D+A E PK +GR + + PK
Sbjct: 61 RLSEACADIAVVETAPKMDGRNMFLVLAPK 90
>pdb|2IFE|A Chain A, Translation Initiation Factor If3 From Escherichia Coli
Ribosome Binding Domain (Residues 84-180)
Length = 100
Score = 61.2 bits (147), Expect = 8e-11
Identities = 35/96 (36%), Positives = 53/96 (54%), Gaps = 1/96 (1%)
Query: 78 KKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDV 137
KKKQK I++KEIK + D K++ F+E K + +GRE + + G++V
Sbjct: 5 KKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEV 64
Query: 138 LFRVQTMMQDLANPEKEP-KTEGRFVSWMFVPKAKE 172
L RV+ +Q+LA E P K EGR + + PK K+
Sbjct: 65 LNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ 100
>pdb|1I96|V Chain V, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
Length = 89
Score = 52.8 bits (125), Expect = 3e-08
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 85 EIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTM 144
E+K IK +I ++D K+ H + F++ VK ++ +GRE + + G +L RV
Sbjct: 1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTED 60
Query: 145 MQDLANPEKEPKTEGRFVSWMFVP 168
++DLA E +P+ GR ++ + P
Sbjct: 61 LKDLAVVEMKPEMLGRDMNMLLAP 84
>pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escherichia Coli
Complexed With Its Substrate N-Acetylglutamate And Its
Substrate Analog Amppnp
Length = 258
Score = 28.1 bits (61), Expect = 0.74
Identities = 15/47 (31%), Positives = 25/47 (52%)
Query: 4 NEVLLNGDINFKEVRCVGDNGEVYGIISSKEALHIAQNLGLDLVLIS 50
N +L NG + V D G++ + + + A +A LG DL+L+S
Sbjct: 134 NSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLS 180
>pdb|1GSJ|A Chain A, Selenomethionine Substituted N-Acetyl-L-Glutamate Kinase
From Escherichia Coli Complexed With Its Substrate
N-Acetyl-L-Glutamate And Its Substrate Analog Amppnp
Length = 258
Score = 28.1 bits (61), Expect = 0.74
Identities = 15/47 (31%), Positives = 25/47 (52%)
Query: 4 NEVLLNGDINFKEVRCVGDNGEVYGIISSKEALHIAQNLGLDLVLIS 50
N +L NG + V D G++ + + + A +A LG DL+L+S
Sbjct: 134 NSLLENGYLPVVSSIGVTDEGQLXNVNADQAATALAATLGADLILLS 180
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 27.3 bits (59), Expect = 1.3
Identities = 18/73 (24%), Positives = 38/73 (51%), Gaps = 4/73 (5%)
Query: 16 EVRCVGDNGEVYGIISSKEALHIAQNLGLDLVLISASAKPPVCKVMDYNKFRYQNEKKIK 75
E V +N EV+ +S + L L + +A+ P+ ++D ++R + EK++K
Sbjct: 751 ETAPVEENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLK 810
Query: 76 E----AKKKQKQI 84
E A++ Q+++
Sbjct: 811 ELLALAERSQRKL 823
>pdb|1RAA|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAA|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAB|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAB|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAC|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAC|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAD|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAD|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAE|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAE|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAF|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAF|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAG|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAG|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAH|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAH|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAI|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
pdb|1RAI|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
pdb|3CSU|C Chain C, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|A Chain A, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|B Chain B, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate
pdb|1F1B|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate
pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLARVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|C Chain C, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|1NBE|A Chain A, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
pdb|1NBE|C Chain C, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
pdb|4AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
pdb|4AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
pdb|5AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
pdb|5AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
pdb|6AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
pdb|6AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
pdb|8AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP)
pdb|8AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP)
pdb|7AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP)
pdb|7AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP)
pdb|1AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|1AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|2AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|2AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|3AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
pdb|3AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|9ATC|A Chain A, Atcase Y165f Mutant
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|1ACM|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Aspartate (PALA)
pdb|1ACM|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Aspartate (PALA)
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|C Chain C, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
pdb|1D09|C Chain C, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
Length = 310
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 219 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 278
Query: 153 KEP 155
K P
Sbjct: 279 KTP 281
>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N (Phosphonacetyl)-L-Aspartate)
pdb|1EKX|C Chain C, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N (Phosphonacetyl)-L-Aspartate)
pdb|1EKX|B Chain B, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N (Phosphonacetyl)-L-Aspartate)
Length = 311
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 IAQNDINYKVKHAREFIESNKH--VKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPE 152
+A+ DI Y + +E ++ +++ VK + VL+ + N+KA + VL + + + + +
Sbjct: 220 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVD 279
Query: 153 KEP 155
K P
Sbjct: 280 KTP 282
>pdb|1HLV|A Chain A, Crystal Structure Of Cenp-B(1-129) Complexed With The
Cenp- B Box Dna
Length = 131
Score = 26.6 bits (57), Expect = 2.1
Identities = 14/32 (43%), Positives = 21/32 (64%), Gaps = 2/32 (6%)
Query: 14 FKEVRCVGDNGEVYGIISSKEALHIAQNLGLD 45
F+++R G V GII ++AL IA+ LG+D
Sbjct: 85 FQQIRAAGL--PVKGIILKEKALRIAEELGMD 114
>pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 26.2 bits (56), Expect = 2.8
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 5/59 (8%)
Query: 21 GDNGEVY-----GIISSKEALHIAQNLGLDLVLISASAKPPVCKVMDYNKFRYQNEKKI 74
GD G Y G+ ++ E G ++ISA + VM N F+Y N KI
Sbjct: 87 GDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIVISAPSADAPMFVMGVNHFKYANSLKI 145
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 25.8 bits (55), Expect = 3.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 62 DYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIE 112
+Y FR E + +AK + + K+ K+ Q+A NDI + V+ E I+
Sbjct: 393 NYKIFRQLIE--LLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID 441
>pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-Hand Protein From Entamoeba Histolytica
pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 25.8 bits (55), Expect = 3.7
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 111 IESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQD 147
I+ N+ KF ++G++ + K GL VL+++ + D
Sbjct: 53 IDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGD 89
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 25.0 bits (53), Expect = 6.2
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 57 VCKVMDYNKFRYQNEKKIKEAKKKQKQIEI 86
+C V+ +N+F Y++E+ +K + + +E+
Sbjct: 160 ICSVIFHNRFDYKDEEFLKLMESLHENVEL 189
>pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta-Sleep-Inducing
Peptide Immunoreactive Peptide, Nmr, 10 Structures
pdb|1DIP|B Chain B, The Solution Structure Of Porcine Delta-Sleep-Inducing
Peptide Immunoreactive Peptide, Nmr, 10 Structures
Length = 78
Score = 25.0 bits (53), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 138 LFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPK 175
L R T+++ LA+PE+ K + R P+ EAP+
Sbjct: 34 LERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPE 71
>pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|B Chain B, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|C Chain C, Crystal Structure Of Human Squalene Synthase
Length = 340
Score = 24.6 bits (52), Expect = 8.2
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 45 DLVLISASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQI 84
D + IS K P+ + +++ F YQ + + E+K+K +Q+
Sbjct: 54 DDMTISVEKKVPL--LHNFHSFLYQPDWRFMESKEKDRQV 91
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,125,260
Number of Sequences: 13198
Number of extensions: 42290
Number of successful extensions: 84
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 22
length of query: 203
length of database: 2,899,336
effective HSP length: 84
effective length of query: 119
effective length of database: 1,790,704
effective search space: 213093776
effective search space used: 213093776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)