BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645846|ref|NP_208024.1| dihydropteroate synthase
(folP) [Helicobacter pylori 26695]
(380 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AJ0| Crystal Structure Of A Ternary Complex Of E. Co... 137 3e-33
pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structu... 105 8e-24
pdb|1AD1|A Chain A, Dihydropteroate Synthetase (Apo Form) F... 91 2e-19
pdb|1CFR| Crystal Structure Of Citrobacter Freundii Restr... 34 0.031
pdb|1QLE|C Chain C, Cryo-Structure Of The Paracoccus Denitr... 31 0.27
pdb|1J6O|A Chain A, Crystal Structure Of Conserved Hypothet... 30 0.45
pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothet... 29 1.0
pdb|1M56|C Chain C, Structure Of Cytochrome C Oxidase From ... 27 3.8
pdb|1EJ6|A Chain A, Reovirus Core 26 6.5
>pdb|1AJ0| Crystal Structure Of A Ternary Complex Of E. Coli Dihydropteroate
Synthase
pdb|1AJ2| Crystal Structure Of A Binary Complex Of E. Coli Dihydropteroate
Synthase
pdb|1AJZ| Structure Of Dihydropteroate Pyrophosphorylase
Length = 282
Score = 137 bits (344), Expect = 3e-33
Identities = 84/260 (32%), Positives = 143/260 (54%), Gaps = 6/260 (2%)
Query: 119 PQIMAVLNLTPDSFYEKSRFDSK-KALEEIYQWLEKGITLIDIGAASSRPESEIIDPKIE 177
P +M +LN+TPDSF + +S A++ + G T+ID+G S+RP + + + E
Sbjct: 15 PHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEE 74
Query: 178 QDRLKEILLEIKSQKLYQCAKFSIDTYHATTAQMALEHYFSILNDVSGFNSAEMLEVAKD 237
R+ ++ E +Q+ S+DT + + + I+ND+ + LE A +
Sbjct: 75 LQRVIPVV-EAIAQRFE--VWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAE 131
Query: 238 YKPTCILMHTQKTPKDMQENVFYHNLFDEMDRFFKEKLEVLEKYVL--QDIILDIGFGFA 295
LMH Q PK MQE Y ++F E++R+F E++ E+ + + ++LD GFGF
Sbjct: 132 TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191
Query: 296 KLKEHNLALIKHLSHFLKFKKPLLVGASRKNTIGLITGREVQDRLAGTLSLHLMALQNGA 355
K HN +L+ L+ F F PLLVG SRK+ IG + +RL+G+L+ ++A GA
Sbjct: 192 KNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSLACAVIAAMQGA 251
Query: 356 SVLRVHDIDEHIDLIKVFKS 375
++RVHD+ E ++ ++V ++
Sbjct: 252 HIIRVHDVKETVEAMRVVEA 271
>pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of 6-
Hydroxymethyl-7,8-Dihydropteroate Synthase (Dhps) From
Mycobacterium Tuberculosis In Complex With 6-
Hydroxymethylpterin Monophosphate
Length = 280
Score = 105 bits (262), Expect = 8e-24
Identities = 85/271 (31%), Positives = 132/271 (48%), Gaps = 15/271 (5%)
Query: 116 PNTPQIMAVLNLTPDSFYEKSRF-DSKKALEEIYQWLEKGITLIDIGAASSRPESEIIDP 174
P Q+M VLN+T DSF + + D A++ G ++D+G SSRP + +DP
Sbjct: 3 PAPVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDP 62
Query: 175 KIEQDRLKEILLEIKSQKLYQCAKFSIDTYHATTAQMALEHYFSILNDVSGFNS-AEMLE 233
+E R+ ++ E+ +Q + SIDT A A+ AL++ ++NDVSG + M
Sbjct: 63 AVETSRVIPVVKELAAQGI----TVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGP 118
Query: 234 VAKDYKPTCILMHTQKTPKDMQE-NVFYHNLFDEM--DRFFKEKLEVLEKYVLQDIILDI 290
+ + +LMH + D V Y N+ E+ D V ++LD
Sbjct: 119 LLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDP 178
Query: 291 GFGFAKLKEHNLALIKHLSHFLKFKKPLLVGASRKNTIG-LITG-----REVQDRLAGTL 344
G GFAK +HN A++ L + P+LVGASRK +G L+ G R R T
Sbjct: 179 GLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATA 238
Query: 345 SLHLMALQNGASVLRVHDIDEHIDLIKVFKS 375
+ +A +GA +RVHD+ +D IKV ++
Sbjct: 239 VISALAALHGAWGVRVHDVRASVDAIKVVEA 269
>pdb|1AD1|A Chain A, Dihydropteroate Synthetase (Apo Form) From Staphylococcus
Aureus
pdb|1AD1|B Chain B, Dihydropteroate Synthetase (Apo Form) From Staphylococcus
Aureus
pdb|1AD4|A Chain A, Dihydropteroate Synthetase Complexed With
Oh-Ch2-Pterin-Pyrophosphate From Staphylococcus Aureus
pdb|1AD4|B Chain B, Dihydropteroate Synthetase Complexed With
Oh-Ch2-Pterin-Pyrophosphate From Staphylococcus Aureus
Length = 266
Score = 90.9 bits (224), Expect = 2e-19
Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 13/265 (4%)
Query: 120 QIMAVLNLTPDSFYEKSRFDS-KKALEEIYQWLEKGITLIDIGAASSRPESEIIDPKIEQ 178
+IM +LN+TPDSF + +F++ + A+ + +++G +ID+G S+RP E+I + E
Sbjct: 4 KIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEEL 63
Query: 179 DRLKEILLEIKSQKLYQCAKFSIDTYHATTAQMALEHYFSILNDV-SGFNSAEMLEVAKD 237
+R+ ++ I + K S+DT+ + A+ L+ I+ND +G M +V
Sbjct: 64 NRVLPVVEAIVGFDV----KISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVVAK 119
Query: 238 YKPTCILMHTQKTPKDMQENVFYHNLFDEMDRFFKEKLEVLEKYVLQDIILDIGFGFAKL 297
Y +LMH +D E V L + + + K+ + I LD G GFAK
Sbjct: 120 YDAEIVLMHNGNGNRD--EPVVEEMLTSLLAQAHQAKIAGIPS---NKIWLDPGIGFAKT 174
Query: 298 KEHNLALIKHLSHFLKFKKPLLVGASRKNTIGLITGREVQ--DRLAGTLSLHLMALQNGA 355
+ ++ L + + P+L+ SRK + G + +R T + + G
Sbjct: 175 RNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGV 234
Query: 356 SVLRVHDIDEHIDLIKVFKSLEETD 380
+RVH+++ + L K L+E +
Sbjct: 235 RAVRVHNVELNAKLAKGIDFLKENE 259
>pdb|1CFR| Crystal Structure Of Citrobacter Freundii Restriction Endonuclease
Cfr10i At 2.15 Angstroms Resolution
Length = 285
Score = 33.9 bits (76), Expect = 0.031
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 141 KKALEEIYQWLEKGITLIDIGAASSRPESEIIDPKIEQDRLKEILLEIKSQKLYQCAKFS 200
K L E L ++L ++ +S P+ IID + ++ LK +L +I +
Sbjct: 107 KSCLSEFIYDLRSKLSLNNVNLITSNPDFSIIDIRGRREELKSMLKDISFSNISLSTISE 166
Query: 201 IDTYHATTAQMA-LEHYFSILNDVSGFNSAEMLEVAKD 237
ID + A LEH S L+ + F L++A +
Sbjct: 167 IDNLYKNFIDYAELEHIKSFLSVKTTFRPDRRLQLAHE 204
>pdb|1QLE|C Chain C, Cryo-Structure Of The Paracoccus Denitrificans
Four-Subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 273
Score = 30.8 bits (68), Expect = 0.27
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 11 LKNALQKIGPEKIAQDRMHQKGVSFVFEIQHLPLSATLILKQEAISV 57
+KNAL +GP+ +D + F+ HLPL TLIL ++V
Sbjct: 109 IKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAV 155
>pdb|1J6O|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 30.0 bits (66), Expect = 0.45
Identities = 29/102 (28%), Positives = 42/102 (40%), Gaps = 12/102 (11%)
Query: 286 IILDIGFGFAKLKEHNLALIKHLSHFLKFKKPLLVGASRKNTIGLITGREVQDR------ 339
I +G KE I+HL F K +K + +G + + I+ EVQ R
Sbjct: 67 IFCSVGVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQI 126
Query: 340 -LAGTLSLHLM-----ALQNGASVLRVHDIDEHIDLIKVFKS 375
LAG L+L L+ A +LR + E +I F S
Sbjct: 127 ELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSS 168
>pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 28.9 bits (63), Expect = 1.0
Identities = 32/130 (24%), Positives = 54/130 (40%), Gaps = 31/130 (23%)
Query: 204 YHATTAQMALEHYFSILNDVSGFNSAEMLEVAKDYKPTCILMHTQKTPKDMQENVFYHNL 263
+H + +EH I ++SG + E+LE A++ IL+ + D +E + L
Sbjct: 8 HHHHHXRKPIEHTADIAYEISGNSYEELLEEARN-----ILLEEEGIVLDTEEKEKXYPL 62
Query: 264 FDEMDRFFKEKLEVLEKYVLQDIILDIGFG----------------FAKLKEHNLALIKH 307
+ D FF + D IL+I G F K+++ IK
Sbjct: 63 EETEDAFFD---------TVNDWILEISKGWAPWRIKREGNELKVTFRKIRKKEGTEIKA 113
Query: 308 LS-HFLKFKK 316
L+ H LKF++
Sbjct: 114 LTYHLLKFER 123
>pdb|1M56|C Chain C, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M56|I Chain I, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M57|C Chain C, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
pdb|1M57|I Chain I, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
Length = 266
Score = 26.9 bits (58), Expect = 3.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 12 KNALQKIGPEKIAQDRMHQKGVSFVFEIQHLPLSATLIL 50
K+AL +GPE D + F+ HLPL TLIL
Sbjct: 103 KHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLIL 141
>pdb|1EJ6|A Chain A, Reovirus Core
Length = 1289
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/21 (52%), Positives = 16/21 (75%)
Query: 264 FDEMDRFFKEKLEVLEKYVLQ 284
FD+ +RF +EKL VL+ VL+
Sbjct: 79 FDDWERFMREKLRVLKYEVLR 99
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,074,455
Number of Sequences: 13198
Number of extensions: 82047
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 9
length of query: 380
length of database: 2,899,336
effective HSP length: 90
effective length of query: 290
effective length of database: 1,711,516
effective search space: 496339640
effective search space used: 496339640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)