BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645847|ref|NP_208025.1| hypothetical protein
[Helicobacter pylori 26695]
(153 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREON... 27 1.0
pdb|1JFK|A Chain A, Minimum Energy Representative Structure... 24 6.7
pdb|1SVQ| Severin (Domain 2 Comprising 114 Residues) (Ds1... 24 8.8
pdb|1SVY| Severin Domain 2, 1.75 Angstrom Crystal Structure 24 8.8
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 26.9 bits (58), Expect = 1.0
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 41 KDAPTENLPFDPDKRETYGFLVL--ELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTD 98
K+ P +LP D + GF + E E A L T+ + +S+++ Q++ + +
Sbjct: 1 KERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLE 60
Query: 99 FYNGKFSKEVENAPK 113
FYN SK+ N+ K
Sbjct: 61 FYN---SKKTSNSQK 72
>pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-Hand Protein From Entamoeba Histolytica
pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 24.3 bits (51), Expect = 6.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 66 MSDREYEAFLRATAGMDESQKRLAAQSLYSLTDF-YNGKFSKEVENAPKQPINGLHKKAL 124
+ E+ F + G D S ++ + LY L D +GK +KE E +G+ K A
Sbjct: 53 IDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKE-EVTSFFKKHGIEKVAE 111
Query: 125 QTFNA 129
Q A
Sbjct: 112 QVMKA 116
>pdb|1SVQ| Severin (Domain 2 Comprising 114 Residues) (Ds111m) (Nmr, 20
Structures)
pdb|1SVR| Severin (Domain 2 Comprising 114 Residues) (Ds111m) (Nmr,
Minimized Average Structure)
Length = 114
Score = 23.9 bits (50), Expect = 8.8
Identities = 14/51 (27%), Positives = 23/51 (44%), Gaps = 7/51 (13%)
Query: 1 MAVSSINQFDS-------NLYGLLNAKSAPKEDLAPIESTEKVEREKKDAP 44
+A SS+N D +Y +KS+P+E E ++ E+K P
Sbjct: 31 LATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLP 81
>pdb|1SVY| Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 23.9 bits (50), Expect = 8.8
Identities = 14/51 (27%), Positives = 23/51 (44%), Gaps = 7/51 (13%)
Query: 1 MAVSSINQFDS-------NLYGLLNAKSAPKEDLAPIESTEKVEREKKDAP 44
+A SS+N D +Y +KS+P+E E ++ E+K P
Sbjct: 31 LATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLP 81
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.129 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 872,938
Number of Sequences: 13198
Number of extensions: 33856
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 2,899,336
effective HSP length: 80
effective length of query: 73
effective length of database: 1,843,496
effective search space: 134575208
effective search space used: 134575208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)