BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645848|ref|NP_208026.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(298 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M57|A Chain A, Structure Of Cytochrome C Oxidase From ... 27 2.2
pdb|1M56|A Chain A, Structure Of Cytochrome C Oxidase From ... 27 2.2
pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride C... 26 6.3
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride C... 25 8.2
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Gluta... 25 8.2
>pdb|1M57|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
pdb|1M57|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
Length = 566
Score = 27.3 bits (59), Expect = 2.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 135 GVVLISDPSVENVGPVEIF-MGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLLG 193
G + + P + +G + +F +G ++GI +S A + R Y+D V+ F + MSL
Sbjct: 373 GSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVD----RYYHDTYYVVAHFHYVMSLGA 428
Query: 194 LVGMFIDIPF 203
+ G+F I F
Sbjct: 429 VFGIFAGIYF 438
>pdb|1M56|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M56|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
Length = 566
Score = 27.3 bits (59), Expect = 2.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 135 GVVLISDPSVENVGPVEIF-MGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLLG 193
G + + P + +G + +F +G ++GI +S A + R Y+D V+ F + MSL
Sbjct: 373 GSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVD----RYYHDTYYVVAHFHYVMSLGA 428
Query: 194 LVGMFIDIPF 203
+ G+F I F
Sbjct: 429 VFGIFAGIYF 438
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
Length = 473
Score = 25.8 bits (55), Expect = 6.3
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 240 APAGIIAPIEYTRIVWGLLFGLYLGDTFLDLKSSLGVALILCSGLLIA 287
AP GI AP+ V G FG+ + F G I G L+A
Sbjct: 352 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLA 399
>pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 25.4 bits (54), Expect = 8.2
Identities = 38/147 (25%), Positives = 60/147 (39%), Gaps = 18/147 (12%)
Query: 152 IFMGILSGIFVSLAYITLRDLREYYD---KQAVILAFAFG--MSLLGLV------GMFID 200
I G++ +F SL T + ++ K+ V++ A G +LGL+ G F
Sbjct: 260 IIFGVVGPVFNSLVLRTQDMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGGGFNL 319
Query: 201 IPFLSTGIHVPRKEDILWISLIGISGTLGQYFLTYAYMNAPAGIIAPIEYTRIVWGLLFG 260
IP + G +L+I + + TL L ++ AP GI AP+ + G FG
Sbjct: 320 IPIAAAGNFSVGL--LLFIFITRVVTTL----LCFS-SGAPGGIFAPMLALGTLLGTAFG 372
Query: 261 LYLGDTFLDLKSSLGVALILCSGLLIA 287
+ F G I G L+A
Sbjct: 373 MAAAVLFPQYHLEAGTFAIAGMGALMA 399
>pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 25.4 bits (54), Expect = 8.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 169 LRDLREYYDKQAVILAFAFGMSLLGLV 195
LR LRE K V++ F GM++ GL+
Sbjct: 242 LRKLRERLPKARVVVCFCEGMTVRGLL 268
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.330 0.147 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,541,288
Number of Sequences: 13198
Number of extensions: 62083
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 5
length of query: 298
length of database: 2,899,336
effective HSP length: 88
effective length of query: 210
effective length of database: 1,737,912
effective search space: 364961520
effective search space used: 364961520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)