BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645850|ref|NP_208028.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 27 1.4
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Fo... 27 1.4
pdb|1CFH| Coagulation Factor Ix (The Gla And Aromatic Ami... 27 1.8
pdb|1K23|C Chain C, Inorganic Pyrophosphatase (Family Ii) F... 26 2.4
pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A ... 26 2.4
pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The D... 26 3.1
pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r 26 3.1
pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin 26 3.1
pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r 26 3.1
pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r 26 3.1
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 25 5.3
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation ... 25 5.3
pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Bind... 25 6.9
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 24 9.0
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 24 9.0
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 24 9.0
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 26.9 bits (58), Expect = 1.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 145 NEVHEKIKHYKRKLPVGSDEYELVF 169
N + EK+K + R P+G ++++F
Sbjct: 91 NVIREKVKEFARTKPIGGASFKIIF 115
>pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
Length = 699
Score = 26.9 bits (58), Expect = 1.4
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 18 DFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQL 77
DF E KA + + + IE LE+ E+ ID+ R L + E + E Q
Sbjct: 495 DFCIRVFSEKKADYQAVDDEIEANLEEFDISEDDIDDGVRRLFAQLAGEDAEISAFELQT 554
Query: 78 FW---MIKRQIAQKEGFHLFWEERCNDLSHQILNKILDED-LIMFSVSENLIRNLIYKSI 133
+ KRQ + +GF + E C +I+ +LD D + E I ++ I
Sbjct: 555 ILRRVLAKRQDIKSDGFSI---ETC-----KIMVDMLDSDGSGKLGLKEFYI---LWTKI 603
Query: 134 DTYSKAYESIENEVHEKIKHYKRK 157
Y K Y I+ + + Y+ +
Sbjct: 604 QKYQKIYREIDVDRSGTMNSYEMR 627
>pdb|1CFH| Coagulation Factor Ix (The Gla And Aromatic Amino Acid Stack
Domains From Residues 1 - 47) (Nmr, 15 Structures)
Length = 47
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 36 ELIEGILEKSVKKENAIDEQARELLEENTDEIEFMR 71
E ++G LE+ +E E+ARE+ E EF +
Sbjct: 8 EFVQGNLERECMEEKCSFEEAREVFENTERTTEFWK 43
>pdb|1K23|C Chain C, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|D Chain D, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
Length = 309
Score = 26.2 bits (56), Expect = 2.4
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 27 LKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKRQIA 86
LKA +L + +E ++ K E + + E+ + NT +IE ++ + +L +I + +A
Sbjct: 185 LKAGADLSKKTVEELISLDAK-EFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKVVA 243
Query: 87 QKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV 120
+K DL ++ IL+ D + ++
Sbjct: 244 EKN----------LDLFLLVITDILENDSLALAI 267
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
Length = 444
Score = 26.2 bits (56), Expect = 2.4
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 25 LELKAPR---ELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMI 81
LEL R ELLC+ + + ++ + EQ REL E N D + + R+ M+
Sbjct: 340 LELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMV 399
Query: 82 KRQI----AQKE----GFHLFWEERCNDL 102
+QI QKE + E R DL
Sbjct: 400 LQQIDGIFEQKELELDQLEYYQERRLKDL 428
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 141 ESIENEVHEKIKHYKRKLPVGSDEYEL 167
E+ E E+H+ +H R L SDE +L
Sbjct: 87 ETSEAEIHQSFQHLLRTLNQSSDELQL 113
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 141 ESIENEVHEKIKHYKRKLPVGSDEYEL 167
E+ E E+H+ +H R L SDE +L
Sbjct: 67 ETSEAEIHQSFQHLLRTLNQSSDELQL 93
>pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin
Length = 360
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 141 ESIENEVHEKIKHYKRKLPVGSDEYEL 167
E+ E E+H+ +H R L SDE +L
Sbjct: 86 ETSEAEIHQSFQHLLRTLNQSSDELQL 112
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 141 ESIENEVHEKIKHYKRKLPVGSDEYEL 167
E+ E E+H+ +H R L SDE +L
Sbjct: 67 ETSEAEIHQSFQHLLRTLNQSSDELQL 93
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 141 ESIENEVHEKIKHYKRKLPVGSDEYEL 167
E+ E E+H+ +H R L SDE +L
Sbjct: 67 ETSEAEIHQSFQHLLRTLNQSSDELQL 93
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 25.0 bits (53), Expect = 5.3
Identities = 17/71 (23%), Positives = 38/71 (52%), Gaps = 1/71 (1%)
Query: 2 RLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLE 61
R KL + + +A D H K+ + + E+L E LE K+++ + E+ + +E
Sbjct: 555 RFKLISPISLMNMVAFD-PHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 613
Query: 62 ENTDEIEFMRM 72
+ + +++F++M
Sbjct: 614 KYSFQVKFIKM 624
>pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Fxv673
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208707
pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr128515
Length = 134
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 36 ELIEGILEKSVKKENAIDEQARELLEENTDEIEF 69
E+ +G LE+ +E E+ARE+ E++ EF
Sbjct: 2 EMKKGHLERECMEETCSYEEAREVFEDSDKTNEF 35
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 24.6 bits (52), Expect = 6.9
Identities = 12/43 (27%), Positives = 21/43 (47%)
Query: 5 LTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVK 47
L+H+ HIS+K + K + +LL E++ L + K
Sbjct: 208 LSHVRHISNKGMEHLLSMKCKNVVPVYDLLLEMLNAHLTRGYK 250
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 24.3 bits (51), Expect = 9.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 42 LEKSVKKENAI------DEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFH 92
+E+ +K +AI DE+ +E LEE +I+ R I++ I Q+EG +
Sbjct: 51 VEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 107
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 24.3 bits (51), Expect = 9.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 42 LEKSVKKENAI------DEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFH 92
+E+ +K +AI DE+ +E LEE +I+ R I++ I Q+EG +
Sbjct: 25 VEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 81
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 24.3 bits (51), Expect = 9.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 42 LEKSVKKENAI------DEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFH 92
+E+ +K +AI DE+ +E LEE +I+ R I++ I Q+EG +
Sbjct: 28 VEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 84
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,008,754
Number of Sequences: 13198
Number of extensions: 38840
Number of successful extensions: 92
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 16
length of query: 183
length of database: 2,899,336
effective HSP length: 83
effective length of query: 100
effective length of database: 1,803,902
effective search space: 180390200
effective search space used: 180390200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)