BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645856|ref|NP_208034.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(76 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K8K|F Chain F, Crystal Structure Of Arp23 COMPLEX 29 0.083
pdb|1BOB| Histone Acetyltransferase Hat1 From Saccharomyc... 27 0.41
pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna... 27 0.41
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 27 0.54
pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimer... 26 0.91
pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod ... 26 0.91
pdb|1SOS|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) Mut... 26 0.91
pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human... 26 0.91
pdb|1SPD|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) >gi... 26 0.91
pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 13... 26 0.91
pdb|1CB4|B Chain B, Crystal Structure Of Copper, Zinc Super... 25 1.2
pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3 25 1.2
pdb|1SRD|A Chain A, Cu,Zn Superoxide Dismutase (E.C.1.15.1.... 25 1.2
pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod -... 25 1.2
pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod ... 24 2.7
pdb|3SOD|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.... 24 3.5
pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From P... 24 3.5
pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3 24 3.5
pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod -... 24 3.5
pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga ... 24 3.5
pdb|2SOD|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.... 24 3.5
pdb|1SXA|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu... 24 3.5
pdb|1JCV| Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DIS... 23 4.5
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes 23 4.5
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes 23 4.5
pdb|2PBG| 6-Phospho-Beta-D-Galactosidase Form-B 23 5.9
pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C >gi... 23 5.9
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 23 5.9
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 23 5.9
pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, ... 23 5.9
pdb|1KMG|A Chain A, The Solution Structure Of Monomeric Cop... 23 5.9
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 23 5.9
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 23 5.9
pdb|1BA9| The Solution Structure Of Reduced Monomeric Sup... 23 5.9
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 23 5.9
pdb|1A7J| Phosphoribulokinase From Rhodobacter Spheroides 23 7.7
>pdb|1K8K|F Chain F, Crystal Structure Of Arp23 COMPLEX
Length = 168
Score = 29.3 bits (64), Expect = 0.083
Identities = 11/54 (20%), Positives = 32/54 (58%)
Query: 21 KIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQKSE 74
++ E+HN+ + +++++++ +S +K+K+ ++ I+S+ + KQ E
Sbjct: 28 QVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADE 81
>pdb|1BOB| Histone Acetyltransferase Hat1 From Saccharomyces Cerevisiae In
Complex With Acetyl Coenzyme A
Length = 320
Score = 26.9 bits (58), Expect = 0.41
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 2 FHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQN 40
F + RD + + +D +F+KH+ L D+ + +++
Sbjct: 261 FDDLRDRNDIQRLRKLGYDAVFQKHSDLSDEFLESSRKS 299
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 26.9 bits (58), Expect = 0.41
Identities = 12/47 (25%), Positives = 25/47 (52%)
Query: 19 FDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMII 65
+DK F K+ +D +KT + + A D + + Q+ + E+ ++I
Sbjct: 57 YDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVI 103
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.6 bits (57), Expect = 0.54
Identities = 11/64 (17%), Positives = 35/64 (54%)
Query: 12 LKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQ 71
++A + + E+ + + ++K EQ++ E ++ ++KL+ + E+++ E R +
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918
Query: 72 KSER 75
+++
Sbjct: 919 AAKK 922
Score = 23.1 bits (48), Expect = 5.9
Identities = 21/68 (30%), Positives = 27/68 (38%), Gaps = 18/68 (26%)
Query: 25 KHNQLDDDIKTAEQQN-------------ASD-----AEVSHMKKQKLKLKDEIHSMIIE 66
K +++DDI E QN SD AE K KLK++ SMI E
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 67 YREKQKSE 74
+ K E
Sbjct: 1044 LEVRLKKE 1051
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc
Sod: The Structural Effects Of Dimerization
pdb|1L3N|B Chain B, The Solution Structure Of Reduced Dimeric Copper Zinc
Sod: The Structural Effects Of Dimerization
pdb|1SOS|F Chain F, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A,
C111S)
pdb|1SOS|G Chain G, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A,
C111S)
pdb|1SOS|H Chain H, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A,
C111S)
pdb|1SOS|I Chain I, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A,
C111S)
pdb|1SOS|J Chain J, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A,
C111S)
Length = 153
Score = 25.8 bits (55), Expect = 0.91
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HEF D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 48 HEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 99
>pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom
(3 Of 3)
Length = 151
Score = 25.8 bits (55), Expect = 0.91
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH DD
Sbjct: 46 HQFGDNTQGCTSAGPHFNPLSKKHGGPSDD 75
>pdb|1SOS|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A, C111S)
pdb|1SOS|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A, C111S)
pdb|1SOS|C Chain C, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A, C111S)
pdb|1SOS|D Chain D, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A, C111S)
pdb|1SOS|E Chain E, Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys 6
Replaced By Ala And Cys 111 Replaced By Ser (C6A, C111S)
Length = 154
Score = 25.8 bits (55), Expect = 0.91
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HEF D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 49 HEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 100
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human)
pdb|1AZV|B Chain B, Familial Als Mutant G37r Cuznsod (Human)
Length = 153
Score = 25.8 bits (55), Expect = 0.91
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HEF D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 48 HEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 99
>pdb|1SPD|A Chain A, Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SPD|B Chain B, Superoxide Dismutase (E.C.1.15.1.1)
Length = 154
Score = 25.8 bits (55), Expect = 0.91
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HEF D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 49 HEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 100
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|B Chain B, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|C Chain C, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|D Chain D, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|E Chain E, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|F Chain F, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|G Chain G, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|H Chain H, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|I Chain I, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|J Chain J, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
Length = 153
Score = 25.8 bits (55), Expect = 0.91
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HEF D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 48 HEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 99
>pdb|1CB4|B Chain B, Crystal Structure Of Copper, Zinc Superoxide Dismutase
pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase
Length = 151
Score = 25.4 bits (54), Expect = 1.2
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH DD
Sbjct: 46 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDD 75
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3
Length = 152
Score = 25.4 bits (54), Expect = 1.2
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH DD
Sbjct: 47 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDD 76
>pdb|1SRD|A Chain A, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SRD|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SRD|C Chain C, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SRD|D Chain D, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
Length = 154
Score = 25.4 bits (54), Expect = 1.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTA 36
HEF D + + PHF+ + H +D+++ A
Sbjct: 48 HEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHA 81
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod - (1 Of 3)
Length = 151
Score = 25.4 bits (54), Expect = 1.2
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH DD
Sbjct: 46 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDD 75
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom
(3 Of 3)
Length = 151
Score = 24.3 bits (51), Expect = 2.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH D+
Sbjct: 46 HQFGDNTQGCTSAGPHFNPLSKKHGGPSDE 75
>pdb|3SOD|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Mutant With
Cys 6 Replaced By Ala (C6a)
Length = 152
Score = 23.9 bits (50), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH D+
Sbjct: 47 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDE 76
>pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|B Chain B, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|C Chain C, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|D Chain D, 4-Aminobutyrate-Aminotransferase From Pig
Length = 472
Score = 23.9 bits (50), Expect = 3.5
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 46 VSHMKKQKLKLKDEIHSMIIEYREKQKS 73
V ++++ + +E+ +I++YR+K+K+
Sbjct: 231 VKENQQEEARCLEEVEDLIVKYRKKKKT 258
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3
Length = 152
Score = 23.9 bits (50), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH D+
Sbjct: 47 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDE 76
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod - (1 Of 3)
Length = 151
Score = 23.9 bits (50), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH D+
Sbjct: 46 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDE 75
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 23.9 bits (50), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 17 PHFDKIFEKHNQ-LDDDIKTAEQQNASDAEVS 47
P D + E+ + LDD + E+QN +D +VS
Sbjct: 429 PEVDVLVEELSSILDDSASSNEKQNIADGDVS 460
>pdb|2SOD|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|2SOD|G Chain G, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|2SOD|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|2SOD|Y Chain Y, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SDA|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At
Tyr 108
pdb|1SDA|G Chain G, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At
Tyr 108
pdb|1SDA|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At
Tyr 108
pdb|1SDA|Y Chain Y, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At
Tyr 108
Length = 152
Score = 23.9 bits (50), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH D+
Sbjct: 47 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDE 76
>pdb|1SXA|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXA|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXC|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXC|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1COB|A Chain A, Superoxide Dismutase (Co Substituted) (E.C.1.15.1.1)
pdb|1COB|B Chain B, Superoxide Dismutase (Co Substituted) (E.C.1.15.1.1)
pdb|1SXB|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXB|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1CBJ|B Chain B, Crystal Structure Of Bovine Superoxide Dismutase
Crystal.
pdb|1CBJ|A Chain A, Crystal Structure Of Bovine Superoxide Dismutase
Crystal.
pdb|1SXZ|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Azide
pdb|1SXN|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0
pdb|1SXS|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Thiocyanate
pdb|1SXZ|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Azide
pdb|1SXS|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Thiocyanate
pdb|1SXN|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0
Length = 151
Score = 23.9 bits (50), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDD 32
H+F D + PHF+ + +KH D+
Sbjct: 46 HQFGDNTQGCTSAGPHFNPLSKKHGGPKDE 75
>pdb|1JCV| Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DISMUTASE Low
Temperature (-180c) Structure
pdb|1YAZ|A Chain A, Azide-Bound Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
pdb|2JCW| Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
pdb|1YSO| Yeast Cu, Zn Superoxide Dismutase With The Reduced Bridge Broken
pdb|1B4L|A Chain A, 15 Atmosphere Oxygen Yeast CuZN SUPEROXIDE DISMUTASE
ROOM Temperature (298k) Structure
pdb|1SDY|A Chain A, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SDY|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SDY|C Chain C, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SDY|D Chain D, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
Length = 153
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/32 (28%), Positives = 16/32 (49%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK 34
HEF D + + PHF+ + H D+++
Sbjct: 48 HEFGDATNGCVSAGPHFNPFKKTHGAPTDEVR 79
>pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
Length = 57
Score = 23.5 bits (49), Expect = 4.5
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 6 RDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHM-KKQKLKLKDEI 60
R+ I+ K+ ++I +L++ +KT + QN+ A ++M ++Q +LK ++
Sbjct: 5 RNRIAASKSRKRKLERIA----RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 56
>pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 58
Score = 23.5 bits (49), Expect = 4.5
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 6 RDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHM-KKQKLKLKDEI 60
R+ I+ K+ ++I +L++ +KT + QN+ A ++M ++Q +LK ++
Sbjct: 6 RNRIAASKSRKRKLERIA----RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 57
>pdb|2PBG| 6-Phospho-Beta-D-Galactosidase Form-B
Length = 468
Score = 23.1 bits (48), Expect = 5.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
D+I +K + P++ KI+ N L + + D + ++K+ L D I
Sbjct: 356 DQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAI 409
>pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C
pdb|3PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-C
pdb|1PBG|B Chain B, Mol_id: 1; Molecule: 6-Phospho-Beta-D-Galactosidase;
Chain: A, B; Synonym: Pgal; Ec: Ec 3.2.1.85; Engineered:
Yes; Other_details: Precipitant Polyethylene Glycol
pdb|1PBG|A Chain A, Mol_id: 1; Molecule: 6-Phospho-Beta-D-Galactosidase;
Chain: A, B; Synonym: Pgal; Ec: Ec 3.2.1.85; Engineered:
Yes; Other_details: Precipitant Polyethylene Glycol
Length = 468
Score = 23.1 bits (48), Expect = 5.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
D+I +K + P++ KI+ N L + + D + ++K+ L D I
Sbjct: 356 DQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAI 409
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 23.1 bits (48), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 42 SDAEVSHMKKQKLKLKDEIHSMIIEY 67
++A K++KLK+K+E ++ EY
Sbjct: 112 TEARKQMSKEEKLKIKEENEKLLKEY 137
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 23.1 bits (48), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 42 SDAEVSHMKKQKLKLKDEIHSMIIEY 67
++A K++KLK+K+E ++ EY
Sbjct: 111 TEARKQMSKEEKLKIKEENEKLLKEY 136
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of
Human Copper, Zinc Superoxide Dismutase Bearing The
Same Charge As The Native Protein
Length = 153
Score = 23.1 bits (48), Expect = 5.9
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HE D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 48 HEEEDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 99
>pdb|1KMG|A Chain A, The Solution Structure Of Monomeric Copper-Free
Superoxide Dismutase
pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC
Resolution
Length = 153
Score = 23.1 bits (48), Expect = 5.9
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HE D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 48 HEEEDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 99
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 23.1 bits (48), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 42 SDAEVSHMKKQKLKLKDEIHSMIIEY 67
++A K++KLK+K+E ++ EY
Sbjct: 140 TEARKQMSKEEKLKIKEENEKLLKEY 165
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 23.1 bits (48), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 42 SDAEVSHMKKQKLKLKDEIHSMIIEY 67
++A K++KLK+K+E ++ EY
Sbjct: 139 TEARKQMSKEEKLKIKEENEKLLKEY 164
>pdb|1BA9| The Solution Structure Of Reduced Monomeric Superoxide
Dismutase, Nmr, 36 Structures
Length = 153
Score = 23.1 bits (48), Expect = 5.9
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIK--------TAEQQNASDAEV 46
HE D + + PHF+ + KH D+ + TA++ +D +
Sbjct: 48 HEEEDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 99
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 23.1 bits (48), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 42 SDAEVSHMKKQKLKLKDEIHSMIIEY 67
++A K++KLK+K+E ++ EY
Sbjct: 139 TEARKQMSKEEKLKIKEENEKLLKEY 164
>pdb|1A7J| Phosphoribulokinase From Rhodobacter Spheroides
Length = 290
Score = 22.7 bits (47), Expect = 7.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 23 FEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69
F + N+ D + + A DA SH + +LK E+ + EY E
Sbjct: 44 FHRFNRADMKAELDRRYAAGDATFSHFSYEANELK-ELERVFREYGE 89
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.128 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,730
Number of Sequences: 13198
Number of extensions: 11283
Number of successful extensions: 58
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 37
length of query: 76
length of database: 2,899,336
effective HSP length: 52
effective length of query: 24
effective length of database: 2,213,040
effective search space: 53112960
effective search space used: 53112960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)