BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645860|ref|NP_208038.1| ribosomal protein S6 (rps6)
[Helicobacter pylori 26695]
         (142 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EG0|C  Chain C, Fitting Of Components With Known Struct...    51  4e-08
pdb|1G1X|A  Chain A, Structure Of Ribosomal Proteins S15, S6...    51  4e-08
pdb|1FJG|F  Chain F, Structure Of The Thermus Thermophilus 3...    51  4e-08
pdb|1LOU|A  Chain A, Ribosomal Protein S6                          50  1e-07
pdb|1CQM|A  Chain A, Protein Aggregation And Alzheimer's Dis...    50  1e-07
pdb|1QJH|A  Chain A, Protein Aggregation And Alzheimer's Dis...    47  1e-06
pdb|1BJ7|    Bovine Lipocalin Allergen Bos D 2                     26  1.5
pdb|1IRU|B  Chain B, Crystal Structure Of The Mammalian 20s ...    26  2.0
pdb|1BRL|A  Chain A, Monooxygenase Mol_id: 1; Molecule: Bact...    25  4.5
pdb|1C7S|A  Chain A, Beta-N-Acetylhexosaminidase Mutant D539...    25  4.5
pdb|1QBA|    Bacterial Chitobiase, Glycosyl Hydrolase Family...    25  4.5
pdb|1C7T|A  Chain A, Beta-N-Acetylhexosaminidase Mutant E540...    25  4.5
pdb|1L3A|C  Chain C, Structure Of The Plant Transcriptional ...    24  5.8
pdb|1EO6|B  Chain B, Crystal Structure Of Gate-16 >gi|108359...    24  7.6
pdb|1LXL|    Nmr Structure Of Bcl-Xl, An Inhibitor Of Progra...    24  7.6
pdb|1BXL|A  Chain A, Structure Of Bcl-XlBAK PEPTIDE COMPLEX,...    24  7.6
pdb|1I2Q|A  Chain A, Crystal Structure Of Escherichia Coli T...    23  10.0
pdb|1I2P|A  Chain A, Crystal Structure Of Escherichia Coli T...    23  10.0
pdb|1UCW|A  Chain A, Complex Of Transaldolase With The Reduc...    23  10.0
pdb|1I2R|A  Chain A, Crystal Structure Of Escherichia Coli T...    23  10.0
pdb|1I2N|A  Chain A, Crystal Structure Of Escherichia Coli T...    23  10.0
pdb|1I2O|A  Chain A, Crystal Structure Of Escherichia Coli T...    23  10.0
pdb|1ONR|A  Chain A, Structure Of Transaldolase B >gi|194198...    23  10.0
>pdb|1EG0|C Chain C, Fitting Of Components With Known Structure Into An 11.5
          A Cryo-Em Map Of The E.Coli 70s Ribosome
 pdb|1QD7|E Chain E, Partial Model For 30s Ribosomal Subunit
          Length = 97

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 26/92 (28%), Positives = 47/92 (50%)

Query: 1  MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYY 60
          MR YE   +L P L + ++  + E  +  +  +   +E   ++G+R LAY I K  +GY+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYF 60

Query: 61 YVAYFKAEPSMIVELERLYRINEDVLRFIVIK 92
               +     + +L R  RI ++V R +V+K
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVK 92
>pdb|1G1X|A Chain A, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
          Ribosomal Rna
 pdb|1G1X|F Chain F, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
          Ribosomal Rna
          Length = 98

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 26/92 (28%), Positives = 47/92 (50%)

Query: 1  MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYY 60
          MR YE   +L P L + ++  + E  +  +  +   +E   ++G+R LAY I K  +GY+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYF 60

Query: 61 YVAYFKAEPSMIVELERLYRINEDVLRFIVIK 92
               +     + +L R  RI ++V R +V+K
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVK 92
>pdb|1FJG|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With The Antibiotics Streptomycin,
          Spectinomycin And Paromomycin
 pdb|1J5E|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit
 pdb|1IBL|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With A Messenger Rna Fragment And
          Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
          Site And With The Antibiotic Paromomycin
 pdb|1HR0|F Chain F, Crystal Structure Of Initiation Factor If1 Bound To The
          30s Ribosomal Subunit
 pdb|1HNZ|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With Hygromycin B
 pdb|1IBM|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With A Messenger Rna Fragment And
          Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
          Site
 pdb|1IBK|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With The Antibiotic Paromomycin
 pdb|1HNW|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With Tetracycline
 pdb|1HNX|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
          Subunit In Complex With Pactamycin
 pdb|1RIS|   Ribosomal Protein S6
 pdb|1I94|F Chain F, Crystal Structures Of The Small Ribosomal Subunit With
          Tetracycline, Edeine And If3
 pdb|1FKA|F Chain F, Structure Of Functionally Activated Small Ribosomal
          Subunit At 3.3 A Resolution
 pdb|1I96|F Chain F, Crystal Structure Of The 30s Ribosomal Subunit From
          Thermus Thermophilus In Complex With The Translation
          Initiation Factor If3 (C-Terminal Domain)
 pdb|1I97|F Chain F, Crystal Structure Of The 30s Ribosomal Subunit From
          Thermus Thermophilus In Complex With Tetracycline
 pdb|1I95|F Chain F, Crystal Structure Of The 30s Ribosomal Subunit From
          Thermus Thermophilus In Complex With Edeine
 pdb|1JGQ|I Chain I, The Path Of Messenger Rna Through The Ribosome. This
          File, 1jgq, Contains The 30s Ribosome Subunit, Three
          Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
          The File 1giy
 pdb|1GIX|I Chain I, Crystal Structure Of The Ribosome At 5.5 A Resolution.
          This File, 1gix, Contains The 30s Ribosome Subunit,
          Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
          In The File 1giy
 pdb|1JGO|I Chain I, The Path Of Messenger Rna Through The Ribosome. This
          File, 1jgo, Contains The 30s Ribosome Subunit, Three
          Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
          The File 1giy
 pdb|1JGP|I Chain I, The Path Of Messenger Rna Through The Ribosome. This
          File, 1jgp, Contains The 30s Ribosome Subunit, Three
          Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
          The File 1giy
          Length = 101

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 26/92 (28%), Positives = 47/92 (50%)

Query: 1  MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYY 60
          MR YE   +L P L + ++  + E  +  +  +   +E   ++G+R LAY I K  +GY+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYF 60

Query: 61 YVAYFKAEPSMIVELERLYRINEDVLRFIVIK 92
               +     + +L R  RI ++V R +V+K
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVK 92
>pdb|1LOU|A Chain A, Ribosomal Protein S6
          Length = 101

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 26/92 (28%), Positives = 46/92 (49%)

Query: 1  MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYY 60
          MR YE   +L P L + ++  + E  +     +   +E   ++G+R LAY I K  +GY+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYF 60

Query: 61 YVAYFKAEPSMIVELERLYRINEDVLRFIVIK 92
               +     + +L R  RI ++V R +V+K
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVK 92
>pdb|1CQM|A Chain A, Protein Aggregation And Alzheimer's Disease:
          Crystallographic Analysis Of The Phenomenon. Engineered
          Version Of The Ribosomal Protein S6 Used As A Stable
          Scaffold To Study Oligomerization.
 pdb|1CQM|B Chain B, Protein Aggregation And Alzheimer's Disease:
          Crystallographic Analysis Of The Phenomenon. Engineered
          Version Of The Ribosomal Protein S6 Used As A Stable
          Scaffold To Study Oligomerization.
 pdb|1CQN|A Chain A, Protein Aggregation And Alzheimer's Disease:
          Crystallographic Analysis Of The Phenomenon. Engineered
          Version Of The Ribosomal Protein S6 Used As A Stable
          Scaffold To Study Oligomerization.
 pdb|1CQN|B Chain B, Protein Aggregation And Alzheimer's Disease:
          Crystallographic Analysis Of The Phenomenon. Engineered
          Version Of The Ribosomal Protein S6 Used As A Stable
          Scaffold To Study Oligomerization
          Length = 101

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 26/92 (28%), Positives = 46/92 (49%)

Query: 1  MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYY 60
          MR YE   +L P L + ++  + E  +  +  +   +E    +G+R LAY I K  +GY+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYF 60

Query: 61 YVAYFKAEPSMIVELERLYRINEDVLRFIVIK 92
               +     + +L R  RI ++V R +V+K
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVK 92
>pdb|1QJH|A Chain A, Protein Aggregation And Alzheimer's Disease.
          Crystallographic Analysis Of The Phenomenon. Engineered
          Version Of The Ribosomal Protein S6 Used As A Stable
          Scaffold To Study Oligomerization
          Length = 101

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 25/92 (27%), Positives = 45/92 (48%)

Query: 1  MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYY 60
          MR YE   +L P L + ++  + E  +  +  +   +E    +G+  LAY I K  +GY+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLMVLAYPIAKDPQGYF 60

Query: 61 YVAYFKAEPSMIVELERLYRINEDVLRFIVIK 92
               +     + +L R  RI ++V R +V+K
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVK 92
>pdb|1BJ7|   Bovine Lipocalin Allergen Bos D 2
          Length = 156

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 22/96 (22%), Positives = 40/96 (40%), Gaps = 9/96 (9%)

Query: 42  DMGMRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINEDVLRFIVIKYESKKEVEA 101
           D G   L  E+ K + GY YV  F    ++      +  ++E++L   V  Y+ ++  + 
Sbjct: 59  DQGTCLLLTEVAKRQEGYVYVLEFYGTNTL-----EVIHVSENMLVTYVENYDGERITKM 113

Query: 102 WHALVDRANKKPSHAKEKHEKTEHTHSHHTEEAESV 137
              L     K  S   E+ EK +  +S      E++
Sbjct: 114 TEGLA----KGTSFTPEELEKYQQLNSERGVPNENI 145
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At
          2.75 A Resolution
 pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At
          2.75 A Resolution
          Length = 233

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 4/52 (7%)

Query: 11 KPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYYYV 62
          K  L +E    K+E     ITKH G++ + +    R L +  +K  + YY V
Sbjct: 52 KSILYDERSVHKVE----PITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLV 99
>pdb|1BRL|A Chain A, Monooxygenase Mol_id: 1; Molecule: Bacterial Luciferase;
           Chain: A, B; Ec: 1.14.14.3; Other_details: Apo (No Fmn)
 pdb|1LUC|A Chain A, Bacterial Luciferase
          Length = 355

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 10/68 (14%)

Query: 9   ILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGM---------RNLAYEIKKHKRGY 59
           IL   +   E K++++ Y EV T+ HG   T +D  +          N A +I ++  G+
Sbjct: 191 ILSWIINTHEKKAQLDLYNEVATE-HGYDVTKIDHCLSYITSVDHDSNRAKDICRNFLGH 249

Query: 60  YYVAYFKA 67
           +Y +Y  A
Sbjct: 250 WYDSYVNA 257
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
           Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
          Length = 858

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (50%)

Query: 32  KHHGVIETSLDMGMRNLAYEIKKHKRGYYYVAYFKAE 68
           K + V+ ++ D    +  YE+   +RGYY+   F  E
Sbjct: 629 KGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDE 665
>pdb|1QBA|   Bacterial Chitobiase, Glycosyl Hydrolase Family 20
 pdb|1QBB|   Bacterial Chitobiase Complexed With Chitobiose (Dinag)
          Length = 858

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (50%)

Query: 32  KHHGVIETSLDMGMRNLAYEIKKHKRGYYYVAYFKAE 68
           K + V+ ++ D    +  YE+   +RGYY+   F  E
Sbjct: 629 KGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDE 665
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
           Di- N Acetyl-D-Glucosamine (Chitobiase)
          Length = 858

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (50%)

Query: 32  KHHGVIETSLDMGMRNLAYEIKKHKRGYYYVAYFKAE 68
           K + V+ ++ D    +  YE+   +RGYY+   F  E
Sbjct: 629 KGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDE 665
>pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 182

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 11/29 (37%), Positives = 13/29 (43%), Gaps = 2/29 (6%)

Query: 102 WHALVDRANKKPSHAKEKHEKTEHTHSHH 130
           WH  V+  + KP    E     EH H HH
Sbjct: 156 WHTAVN--SFKPESGAELEWNLEHHHHHH 182
>pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
 pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
          Length = 117

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 3/29 (10%)

Query: 36  VIETSLDMGMRNLAYEIKKHKRGYYYVAY 64
           V ++SL MG     YE +K + G+ YVAY
Sbjct: 84  VPQSSLTMGQ---LYEKEKDEDGFLYVAY 109
>pdb|1LXL|   Nmr Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell Death,
           Minimized Average Structure
 pdb|1MAZ|   X-Ray Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell Death
          Length = 221

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 97  KEVEAWHALVDR-ANKKPSHAKEKHEKTEHTHSHH 130
           +E   W   V+   N   + +++  E+ EH H HH
Sbjct: 187 QENGGWDTFVELYGNNAAAESRKGQERLEHHHHHH 221
>pdb|1BXL|A Chain A, Structure Of Bcl-XlBAK PEPTIDE COMPLEX, NMR, MINIMIZED
           Average Structure
          Length = 181

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 97  KEVEAWHALVDR-ANKKPSHAKEKHEKTEHTHSHH 130
           +E   W   V+   N   + +++  E+ EH H HH
Sbjct: 147 QENGGWDTFVELYGNNAAAESRKGQERLEHHHHHH 181
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant T156a
 pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant T156a
          Length = 316

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 248 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 287
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant D17a
 pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant D17a
          Length = 316

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 248 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 287
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
           Intermediate
 pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
           Intermediate
          Length = 317

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 249 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 288
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant S176a
 pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant S176a
          Length = 316

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 248 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 287
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant N35a
 pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant N35a
          Length = 316

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 248 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 287
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant E96a
 pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
           Mutant E96a
          Length = 316

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 248 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 287
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
 pdb|1ONR|B Chain B, Structure Of Transaldolase B
          Length = 316

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 45  MRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINED 84
           ++ LA      +R   Y    KA P+ I E E L++ N+D
Sbjct: 248 LKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQD 287
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.315    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 803,590
Number of Sequences: 13198
Number of extensions: 29743
Number of successful extensions: 108
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 23
length of query: 142
length of database: 2,899,336
effective HSP length: 79
effective length of query: 63
effective length of database: 1,856,694
effective search space: 116971722
effective search space used: 116971722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)