BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645861|ref|NP_208039.1| hypothetical protein
[Helicobacter pylori 26695]
(340 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening... 28 1.1
pdb|2POL|A Chain A, Pol Iii (Beta Subunit) (E.C.2.7.7.7) >g... 28 1.1
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 27 3.3
pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta >g... 27 4.4
pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The... 27 4.4
pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex ... 27 4.4
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta >gi|5... 27 4.4
pdb|1H54|B Chain B, Maltose Phosphorylase From Lactobacillu... 26 5.7
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 26 7.4
pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas... 26 7.4
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotoba... 25 9.7
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structu... 25 9.7
pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of Th... 25 9.7
>pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
Length = 366
Score = 28.5 bits (62), Expect = 1.1
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 148 FFIPKTWESLKFLQERANF--LHLDISGHLLNALFEINNEDLGVSFNDLDKLAVLNAPI- 204
F +P+ ++K L E F H D+ +L LFE E+L D +LAV + PI
Sbjct: 128 FTLPQA--TMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIG 185
Query: 205 -TLEDIQELSSNAGDMDLQKLILG 227
+L + G ++L +++ G
Sbjct: 186 QSLPSHSVIVPRKGVIELMRMLDG 209
>pdb|2POL|A Chain A, Pol Iii (Beta Subunit) (E.C.2.7.7.7)
pdb|2POL|B Chain B, Pol Iii (Beta Subunit) (E.C.2.7.7.7)
Length = 366
Score = 28.5 bits (62), Expect = 1.1
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 148 FFIPKTWESLKFLQERANF--LHLDISGHLLNALFEINNEDLGVSFNDLDKLAVLNAPI- 204
F +P+ ++K L E F H D+ +L LFE E+L D +LAV + PI
Sbjct: 128 FTLPQA--TMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIG 185
Query: 205 -TLEDIQELSSNAGDMDLQKLILG 227
+L + G ++L +++ G
Sbjct: 186 QSLPSHSVIVPRKGVIELMRMLDG 209
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 26.9 bits (58), Expect = 3.3
Identities = 15/52 (28%), Positives = 23/52 (43%)
Query: 22 GEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQIATLLEQDSLFGG 73
G D + +IS + DI+ S+ YA EK+ I T E + + G
Sbjct: 15 GSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSG 66
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 194 LDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKS 233
L++ AV N P L ++ + +N G+ + ++ GL +K S
Sbjct: 31 LERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNS 70
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 194 LDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKS 233
L++ AV N P L ++ + +N G+ + ++ GL +K S
Sbjct: 25 LERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNS 64
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
Length = 442
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 194 LDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKS 233
L++ AV N P L ++ + +N G+ + ++ GL +K S
Sbjct: 25 LERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNS 64
>pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
Length = 462
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 194 LDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKS 233
L++ AV N P L ++ + +N G+ + ++ GL +K S
Sbjct: 25 LERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNS 64
>pdb|1H54|B Chain B, Maltose Phosphorylase From Lactobacillus Brevis
pdb|1H54|A Chain A, Maltose Phosphorylase From Lactobacillus Brevis
Length = 754
Score = 26.2 bits (56), Expect = 5.7
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 93 DINLFLKALERPSHN-RLIIGLYNAKSDTTKYKYTSD------AIVKFFQKSPLKDEAIC 145
D++ KA+E S RL + YN +DTT + + A+V+ F ++D +
Sbjct: 640 DLHYEDKAVELYSRTARLDLDNYN--NDTTDGLHITSMTGAWIAVVQGFAGMRVRDGQLH 697
Query: 146 ARFFIPKTWESLKFLQ 161
F+PKTW S F Q
Sbjct: 698 YAPFLPKTWTSYTFRQ 713
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 25.8 bits (55), Expect = 7.4
Identities = 15/52 (28%), Positives = 23/52 (43%)
Query: 22 GEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQIATLLEQDSLFGG 73
G D + +IS + DI+ S+ YA EK+ I T E + + G
Sbjct: 15 GSTDPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 25.8 bits (55), Expect = 7.4
Identities = 16/51 (31%), Positives = 25/51 (48%)
Query: 142 EAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLGVSFN 192
E + F+ + +E F QE A+ L D H LNA+ + DL +F+
Sbjct: 129 ELVLRGIFLLRRFELEWFYQEGASRLFPDAWEHYLNAIPPVERADLMSAFH 179
>pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1NIP|A Chain A, Nitrogenase Iron Protein
pdb|1NIP|B Chain B, Nitrogenase Iron Protein
Length = 289
Score = 25.4 bits (54), Expect = 9.7
Identities = 10/28 (35%), Positives = 20/28 (70%)
Query: 195 DKLAVLNAPITLEDIQELSSNAGDMDLQ 222
+KL V+ PIT+++++EL G M+++
Sbjct: 250 NKLLVIPNPITMDELEELLMEFGIMEVE 277
>pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 289
Score = 25.4 bits (54), Expect = 9.7
Identities = 10/28 (35%), Positives = 20/28 (70%)
Query: 195 DKLAVLNAPITLEDIQELSSNAGDMDLQ 222
+KL V+ PIT+++++EL G M+++
Sbjct: 250 NKLLVIPNPITMDELEELLMEFGIMEVE 277
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
Length = 289
Score = 25.4 bits (54), Expect = 9.7
Identities = 10/28 (35%), Positives = 20/28 (70%)
Query: 195 DKLAVLNAPITLEDIQELSSNAGDMDLQ 222
+KL V+ PIT+++++EL G M+++
Sbjct: 250 NKLLVIPNPITMDELEELLMEFGIMEVE 277
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.142 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,900,162
Number of Sequences: 13198
Number of extensions: 77914
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 13
length of query: 340
length of database: 2,899,336
effective HSP length: 89
effective length of query: 251
effective length of database: 1,724,714
effective search space: 432903214
effective search space used: 432903214
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)