BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645863|ref|NP_208041.1| shikimate 5-dehydrogenase
(aroE) [Helicobacter pylori 26695]
(263 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog Fr... 26 5.4
pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Compl... 26 5.4
pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Co... 26 5.4
pdb|1FCD|C Chain C, Flavocytochrome C Sulfide Dehydrogenase... 25 7.0
pdb|1MLA| Mol_id: 1; Molecule: Malonyl-Coenzyme A Acyl Ca... 25 7.0
pdb|1A87| Colicin N 25 7.0
pdb|1GZP|A Chain A, Cd1b In Complex With Gm2 Ganglioside >g... 25 9.2
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 7/51 (13%)
Query: 217 LSLAKELKTP----FQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263
L + KE+ P Q G D L+ KF+ S + + KAF ++R VF
Sbjct: 239 LEIVKEVFEPEVYLLQLGTDPLLEDY---LSKFNLSNVAFLKAFNIVREVF 286
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
Length = 586
Score = 25.8 bits (55), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 229 DGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263
+G L+Y F+K A+ +P K E+M ++F
Sbjct: 367 EGTYFLLYDFIDYFDKDDATALPRDKYLEIMNNIF 401
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 7/51 (13%)
Query: 217 LSLAKELKTP----FQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263
L + KE+ P Q G D L+ KF+ S + + KAF ++R VF
Sbjct: 239 LEIVKEVFEPEVYLLQLGTDPLLEDY---LSKFNLSNVAFLKAFNIVREVF 286
>pdb|1FCD|C Chain C, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
pdb|1FCD|D Chain D, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
Length = 174
Score = 25.4 bits (54), Expect = 7.0
Identities = 16/54 (29%), Positives = 24/54 (43%)
Query: 167 EPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLA 220
+P K +FD + T A LH++ V G + Y + G TP+L A
Sbjct: 79 QPAKQSFDTALADTGAKLHDKYCEKCHVEGGKPLADEEDYHILAGQWTPYLQYA 132
>pdb|1MLA| Mol_id: 1; Molecule: Malonyl-Coenzyme A Acyl Carrier Protein
Transacylase; Chain: Null; Synonym: Malonyl-Coa Acp
Transacylase; Engineered: Yes
Length = 309
Score = 25.4 bits (54), Expect = 7.0
Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 7/68 (10%)
Query: 121 ALILGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDFFQRLGCDCFMEPPKSAF 173
A I+G ++ A ACE +G VS +N +S G + +R G C K A
Sbjct: 133 AAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGAKRAL 192
Query: 174 DLIINATS 181
L ++ S
Sbjct: 193 PLPVSVPS 200
>pdb|1A87| Colicin N
Length = 321
Score = 25.4 bits (54), Expect = 7.0
Identities = 26/88 (29%), Positives = 40/88 (44%), Gaps = 15/88 (17%)
Query: 93 VLENDELVGYNTDALGFYLSLKQKNYQNALILGAGGSAKALACELKK-QGLQVSVLNRSS 151
+L+ ELV D LG YL +K KN AK +A ++K G + N +
Sbjct: 130 LLKASELVSGMGDKLGEYLGVKYKNV-----------AKEVANDIKNFHGRNIRSYNEAM 178
Query: 152 RGLDFFQRLGCDCFMEPPKSAFDLIINA 179
L+ ++ + M+ KS D I+NA
Sbjct: 179 ASLN---KVLANPKMKVNKSDKDAIVNA 203
>pdb|1GZP|A Chain A, Cd1b In Complex With Gm2 Ganglioside
pdb|1GZQ|A Chain A, Cd1b In Complex With Phophatidylinositol
Length = 300
Score = 25.0 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 14/34 (40%)
Query: 135 CELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEP 168
CEL G VS L + GLDF C P
Sbjct: 105 CELHSGGAIVSFLRGALGGLDFLSVKNASCVPSP 138
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,434,138
Number of Sequences: 13198
Number of extensions: 54587
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 7
length of query: 263
length of database: 2,899,336
effective HSP length: 86
effective length of query: 177
effective length of database: 1,764,308
effective search space: 312282516
effective search space used: 312282516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)