BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645864|ref|NP_208042.1| hypothetical protein
[Helicobacter pylori 26695]
(192 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QB3|B Chain B, Crystal Structure Of The Cell Cycle Reg... 27 1.2
pdb|1AVZ|B Chain B, V-1 Nef Protein In Complex With Wild Ty... 27 1.5
pdb|2NEF| Hiv-1 Nef (Regulatory Factor), Nmr, 40 Structures 27 1.5
pdb|1FN9|A Chain A, Crystal Structure Of The Reovirus Outer... 27 2.0
pdb|1JMU|G Chain G, Crystal Structure Of The Reovirus Mu1SI... 26 2.6
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 26 2.6
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 26 2.6
pdb|1CVR|A Chain A, Crystal Structure Of The Arg Specific C... 26 3.4
pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidi... 25 7.5
pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxi... 25 7.5
pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduc... 25 7.5
>pdb|1QB3|B Chain B, Crystal Structure Of The Cell Cycle Regulatory Protein
Cks1
pdb|1QB3|A Chain A, Crystal Structure Of The Cell Cycle Regulatory Protein
Cks1
pdb|1QB3|C Chain C, Crystal Structure Of The Cell Cycle Regulatory Protein
Cks1
Length = 150
Score = 27.3 bits (59), Expect = 1.2
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 88 TAAQKQETKQEQEKENEPKQDSVPPVQNNQKTP 120
TAA +Q+ +Q+Q+++ + +Q + N+ + P
Sbjct: 114 TAAAQQQQQQQQQQQQQQQQHQTQSISNDMQVP 146
>pdb|1AVZ|B Chain B, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
pdb|1AVZ|A Chain A, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
pdb|1AVV| Hiv-1 Nef Protein, Unliganded Core Domain
Length = 151
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 11/63 (17%)
Query: 120 PTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHET 179
P TP + +P+ YK A V++ F KG + GL+ + +L++ + + T
Sbjct: 14 PVTPQVPLRPMTYKAA---VDLSHFLKEKGGLEGLIHSQRRQDILDL--------WIYHT 62
Query: 180 KGY 182
+GY
Sbjct: 63 QGY 65
>pdb|2NEF| Hiv-1 Nef (Regulatory Factor), Nmr, 40 Structures
Length = 136
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 11/63 (17%)
Query: 120 PTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHET 179
P TP + +P+ YK A V++ F KG + GL+ + +L++ + + T
Sbjct: 14 PVTPQVPLRPMTYKAA---VDLSHFLKEKGGLEGLIHSQRRQDILDL--------WIYHT 62
Query: 180 KGY 182
+GY
Sbjct: 63 QGY 65
>pdb|1FN9|A Chain A, Crystal Structure Of The Reovirus Outer Capsid Protein
Sigma 3
pdb|1FN9|B Chain B, Crystal Structure Of The Reovirus Outer Capsid Protein
Sigma 3
Length = 365
Score = 26.6 bits (57), Expect = 2.0
Identities = 27/121 (22%), Positives = 51/121 (41%), Gaps = 18/121 (14%)
Query: 40 DSAPISPN-VEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQK---QET 95
DS+ + PN + + + NGV + T+ S T D+ L+ E
Sbjct: 175 DSSDLIPNFMMRDPSHAFNGV------KLGGDARQTQFSRTFDSRSSLEWGVMVYDYSEL 228
Query: 96 KQEQEKENEPKQDSVPPVQN-------NQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTK 148
+ + K +++ V P ++ + TTP++GK P + ++G N + +P K
Sbjct: 229 EHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTG-NCKMYPFIK 287
Query: 149 G 149
G
Sbjct: 288 G 288
>pdb|1JMU|G Chain G, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|H Chain H, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|I Chain I, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 366
Score = 26.2 bits (56), Expect = 2.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 40 DSAPISPN-VEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQK---QET 95
DS+ + PN + + + NGV T+ S T D+ L+ E
Sbjct: 176 DSSDLVPNFMMRDPSHAFNGV------RLEGDARQTQFSRTFDSRSSLEWGVMVYDYSEL 229
Query: 96 KQEQEKENEPKQDSVPPVQN-------NQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTK 148
+ + K +++ V P ++ + TTP++GK P + ++G N + +P K
Sbjct: 230 EHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTG-NCKMYPFIK 288
Query: 149 G 149
G
Sbjct: 289 G 289
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/42 (23%), Positives = 24/42 (56%)
Query: 63 KQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENE 104
K++++ + A E+ P K++ +D A++ E ++KE +
Sbjct: 41 KKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/42 (23%), Positives = 24/42 (56%)
Query: 63 KQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENE 104
K++++ + A E+ P K++ +D A++ E ++KE +
Sbjct: 41 KKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
>pdb|1CVR|A Chain A, Crystal Structure Of The Arg Specific Cysteine Proteinase
Gingipain R (Rgpb)
Length = 435
Score = 25.8 bits (55), Expect = 3.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 48 VEKTETERQNGVLSPKQEE--------ANATTTATEESPTKDTAPPLDTAAQKQETKQEQ 99
VE+ E R +++ K E N TE +D A P+ A +Q KQE
Sbjct: 4 VEEKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEY 63
Query: 100 EKE 102
EKE
Sbjct: 64 EKE 66
>pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1QKS|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOM|B Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOM|A Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
Length = 567
Score = 24.6 bits (52), Expect = 7.5
Identities = 13/44 (29%), Positives = 20/44 (44%), Gaps = 2/44 (4%)
Query: 80 KDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTP 123
+ APP D AA ++ K + EP D++ Q + P P
Sbjct: 2 EQVAPPKDPAAALEDHKTRTDNRYEPSLDNL--AQQDVAAPGAP 43
>pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ5|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ4|A Chain A, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ3|A Chain A, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ3|B Chain B, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ4|B Chain B, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1DY7|B Chain B, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1H9X|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1HCM|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1H9X|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1HCM|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1H9Y|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1H9Y|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1DY7|A Chain A, Cytochrome Cd1 Nitrite Reductase, Co Complex
Length = 567
Score = 24.6 bits (52), Expect = 7.5
Identities = 13/44 (29%), Positives = 20/44 (44%), Gaps = 2/44 (4%)
Query: 80 KDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTP 123
+ APP D AA ++ K + EP D++ Q + P P
Sbjct: 2 EQVAPPKDPAAALEDHKTRTDNRYEPSLDNL--AQQDVAAPGAP 43
>pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
pdb|1E2R|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
Length = 567
Score = 24.6 bits (52), Expect = 7.5
Identities = 13/44 (29%), Positives = 20/44 (44%), Gaps = 2/44 (4%)
Query: 80 KDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTP 123
+ APP D AA ++ K + EP D++ Q + P P
Sbjct: 2 EQVAPPKDPAAALEDHKTRTDNRYEPSLDNL--AQQDVAAPGAP 43
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 986,353
Number of Sequences: 13198
Number of extensions: 36714
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 2,899,336
effective HSP length: 83
effective length of query: 109
effective length of database: 1,803,902
effective search space: 196625318
effective search space used: 196625318
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)