BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645869|ref|NP_208047.1| protein translocation
protein, low temperature (secG) [Helicobacter pylori 26695]
(201 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 36 0.003
pdb|1EAH|1 Chain 1, Pv2l Complexed With Antiviral Agent Sch... 30 0.19
pdb|1LD4|A Chain A, Placement Of The Structural Proteins In... 29 0.43
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 27 1.2
pdb|1DIO|B Chain B, Diol Dehydratase-Cyanocobalamin Complex... 26 3.6
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 25 6.1
pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa 25 8.0
pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From C... 25 8.0
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
Length = 1733
Score = 36.2 bits (82), Expect = 0.003
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
Query: 88 TNKELSPLVPATGTLNPALNPTLNPTLNPLEQ--APTNPLMPQQTPNELPKEPAKTPSVE 145
T+ SP P+ +P+ +PT +P+ +P +PT+P +P P PA +P +
Sbjct: 1664 TSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQD 1722
Query: 146 SPKQNE 151
K NE
Sbjct: 1723 EQKHNE 1728
Score = 35.8 bits (81), Expect = 0.003
Identities = 24/78 (30%), Positives = 41/78 (51%), Gaps = 7/78 (8%)
Query: 88 TNKELSPLVPATGTLNPALNPTLNPTLNPLEQA--PTNPLMPQQTPNELPKEPAKTPS-- 143
T+ SP P+ +P+ +PT +P+ +P + PT+P +P+ P P +P
Sbjct: 1657 TSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSP 1715
Query: 144 VESPKQNEKNEKNDAKEN 161
SPKQ+E +K++ EN
Sbjct: 1716 AYSPKQDE--QKHNENEN 1731
Score = 32.0 bits (71), Expect = 0.050
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
Query: 88 TNKELSPLVPATGTLNPALNPTLNPTLNPLEQA--PTNPLMPQQTPNELPKEPAKTPSVE 145
T+ SP P+ +P+ +PT +P+ +P + PT+P +P+ P PA +P+
Sbjct: 1608 TSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1666
Query: 146 S 146
S
Sbjct: 1667 S 1667
>pdb|1EAH|1 Chain 1, Pv2l Complexed With Antiviral Agent Sch48973
Length = 301
Score = 30.0 bits (66), Expect = 0.19
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 85 ETKTNKELSPLVPA-----TGTLNPALNPTLNPTLNPLEQAPTNPLMPQ---QTPNELPK 136
E T L+PL PA T + PA + P L +E TNPL+P QT + + K
Sbjct: 11 EGVTRNALTPLTPANNLPDTQSSGPAHSKE-TPALTAVETGATNPLVPSDTVQTRHVIQK 69
Query: 137 EPAKTPSVES 146
+VES
Sbjct: 70 RTRSESTVES 79
>pdb|1LD4|A Chain A, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|B Chain B, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|C Chain C, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|D Chain D, Placement Of The Structural Proteins In Sindbis Virus
Length = 264
Score = 28.9 bits (63), Expect = 0.43
Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 3/39 (7%)
Query: 121 PTNPLMPQQTPNELPKEPAKTPSVESPKQNEKNEKNDAK 159
P P P + + PK+P P + PK EK +K AK
Sbjct: 62 PPRPRPPPRQKKQAPKQP---PKPKKPKTQEKKKKQPAK 97
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 27.3 bits (59), Expect = 1.2
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 112 PTLNPLEQAPTNPLMPQQTPN----ELPKEPAKTPSVESPKQNEKNEKNDAKENG-IKGV 166
PT P N L P+ PN E ++ + + + +++E E+ + ++N +
Sbjct: 110 PTFKPYSGTAYNALAPKGAPNSCEWEQTEDSGRAVAEDEEEEDEDEEEEEEEQNARDQAT 169
Query: 167 EKTKENAKTPPT--THQKPKTHATQTNAHTNQK 197
+KT A+ P + T K NA T K
Sbjct: 170 KKTHVYAQAPLSGETITKSGLQIGSDNAETQAK 202
>pdb|1DIO|B Chain B, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|E Chain E, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1EEX|B Chain B, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|E Chain E, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|B Chain B, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|E Chain E, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGM|B Chain B, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|E Chain E, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k
Length = 224
Score = 25.8 bits (55), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 112 PTLNPLEQAPTNPLMPQQTPNELPKEPAKTPSVESPK 148
P L+ LE P PL+ +T ++ K A+ ESP+
Sbjct: 146 PPLSNLELFPQAPLLTLETYRQIGKNAARYAKRESPQ 182
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 25.0 bits (53), Expect = 6.1
Identities = 16/81 (19%), Positives = 30/81 (36%), Gaps = 1/81 (1%)
Query: 121 PTNPLMPQQTPNELPKEPAKTPSVESPKQNEKNEKNDAKENGIKGVEKTKENAKTPPTTH 180
P MP++TP++ + ++ K N E +E + KE H
Sbjct: 16 PRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENH 75
Query: 181 QK-PKTHATQTNAHTNQKKDE 200
+ K+H + +K+E
Sbjct: 76 KAYLKSHQVHRHKLKEMEKEE 96
>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
Length = 633
Score = 24.6 bits (52), Expect = 8.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 73 FYNKEYGKSVLDETKTNKELSPLVPATGTLNPALNPTLNPTLNPLEQAPTNPL--MPQQT 130
F N+ L + N EL L N ++ LNPT NP+ + T+ + M Q
Sbjct: 100 FLNQRLNTDTL--ARVNAELIGLQANIREFNQQVDNFLNPTQNPVPLSITSSVNTMQQLF 157
Query: 131 PNELPK 136
N LP+
Sbjct: 158 LNRLPQ 163
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
Length = 297
Score = 24.6 bits (52), Expect = 8.0
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 73 FYNKEYGKSVLDETKTNKELSPLVPATGTLN 103
F N +++LD N EL PL+ T T N
Sbjct: 86 FSNDVKLQNILDHAIXNGELEPLIVVTPTFN 116
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.127 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,182,819
Number of Sequences: 13198
Number of extensions: 50196
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 10
length of query: 201
length of database: 2,899,336
effective HSP length: 84
effective length of query: 117
effective length of database: 1,790,704
effective search space: 209512368
effective search space used: 209512368
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)