BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645873|ref|NP_208051.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(205 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad... 115 5e-27
pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An ... 99 3e-22
pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase 45 8e-06
pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase >gi|158... 45 8e-06
pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolas... 29 0.44
pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue 27 1.7
pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase 27 2.2
pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH T... 27 2.2
pdb|1GRI|A Chain A, Grb2 >gi|1421090|pdb|1GRI|B Chain B, Grb2 26 3.7
pdb|1J77|A Chain A, Crystal Structure Of Gram-Negative Bact... 26 3.7
pdb|1AOZ|A Chain A, Ascorbate Oxidase (E.C.1.10.3.3) >gi|44... 25 4.9
pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesi... 25 4.9
pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREON... 25 8.3
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 115 bits (287), Expect = 5e-27
Identities = 71/152 (46%), Positives = 96/152 (62%), Gaps = 7/152 (4%)
Query: 11 EVASPYGWKKNPQKVLDFYNQRRRQLFEVYPNKAHKALAELEKHYQVN-IITQNVDDLHE 69
E+A+P + K+P+KV +Y R ++F PNKAH+A AELE+ + +ITQNVDDLHE
Sbjct: 57 ELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHE 116
Query: 70 RAGSSRILHLHGELLSVRSEKDPNLVYRWEKDLNLGDLAK-DK--SQLRPDIVWFGEAVP 126
RAGS ++HLHG L VR N + E + L K DK S LRP +VWFGE +P
Sbjct: 117 RAGSRNVIHLHGSLRVVRCTSCNN-SFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLP 175
Query: 127 --LLKEAISLVKQAHLLIIIGTSLQVYPAASL 156
+L A+ V++A ++I+ GTS V PAASL
Sbjct: 176 PDVLDRAMREVERADVIIVAGTSAVVQPAASL 207
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
Length = 253
Score = 99.4 bits (246), Expect = 3e-22
Identities = 72/207 (34%), Positives = 115/207 (54%), Gaps = 18/207 (8%)
Query: 7 HDIMEVASPYGWKKNPQKVLDFYNQRRRQLFEVYPNKAHKALAELEKHYQVN-IITQNVD 65
+D EVAS G+K+NP+ +F + + +LF PN AH A+AELE+ V +ITQN+D
Sbjct: 45 YDPEEVASISGFKRNPRAFWEFSMEMKDKLF-AEPNPAHYAIAELERMGIVKAVITQNID 103
Query: 66 DLHERAGSSRILHLHGELLSVRSEKDPNLVYRWE---KDLNLGDLAKDKS----QLRPDI 118
LH+RAGS R+L LHG + + D + Y W +D N G++ + + ++P +
Sbjct: 104 MLHQRAGSRRVLELHGSMDKLDC-LDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRV 162
Query: 119 VWFGEAVP--LLKEAISLVKQAHLLIIIGTSLQVYPAASL-YTHAHKDALIYYIDPKAKN 175
V FGE +P L EAI K +++G+SL VYPAA L Y A + ++ +
Sbjct: 163 VLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTM 222
Query: 176 AHLPQNVQCINESAVHAMQDLMPKLIE 202
A +V+ I ++ +++PK++E
Sbjct: 223 ADPIFDVKIIGKAG-----EVLPKIVE 244
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
Length = 323
Score = 44.7 bits (104), Expect = 8e-06
Identities = 39/140 (27%), Positives = 64/140 (44%), Gaps = 17/140 (12%)
Query: 38 EVYPNKAHKALAEL------EKHYQVNIITQNVDDLHERAGSSR--ILHLHGELLS---V 86
E+YP + + +K + TQN+D L AG + ++ HG + V
Sbjct: 104 ELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCV 163
Query: 87 RSEKDPNLVYRWEKDLNLGDLAKD----KSQLRPDIVWFGEAVP--LLKEAISLVKQAHL 140
+ W K+ ++ +S ++PDIV+FGE++P S + L
Sbjct: 164 SASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDL 223
Query: 141 LIIIGTSLQVYPAASLYTHA 160
L+++GTSLQV P ASL + A
Sbjct: 224 LLVMGTSLQVQPFASLISKA 243
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 44.7 bits (104), Expect = 8e-06
Identities = 39/140 (27%), Positives = 64/140 (44%), Gaps = 17/140 (12%)
Query: 38 EVYPNKAHKALAEL------EKHYQVNIITQNVDDLHERAGSSR--ILHLHGELLS---V 86
E+YP + + +K + TQN+D L AG + ++ HG + V
Sbjct: 104 ELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCV 163
Query: 87 RSEKDPNLVYRWEKDLNLGDLAKD----KSQLRPDIVWFGEAVP--LLKEAISLVKQAHL 140
+ W K+ ++ +S ++PDIV+FGE++P S + L
Sbjct: 164 SASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDL 223
Query: 141 LIIIGTSLQVYPAASLYTHA 160
L+++GTSLQV P ASL + A
Sbjct: 224 LLVMGTSLQVQPFASLISKA 243
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 28.9 bits (63), Expect = 0.44
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 53 KHYQVNIITQNVDDLHERAGSSRILHLHGELLSVRSEKDPNLVYRWEKDLNLGDLAKDKS 112
KHY+V + + + E AG + +L LHG P + W K + G LA+
Sbjct: 10 KHYEVQLPDVKIHYVREGAGPTLLL-LHGW---------PGFWWEWSKVI--GPLAEHYD 57
Query: 113 QLRPDIVWFGEA 124
+ PD+ FG++
Sbjct: 58 VIVPDLRGFGDS 69
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 26.9 bits (58), Expect = 1.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 114 LRPDIVWFGEAVPLLKEAIS-LVKQAHLLIIIGTSLQVYPAASLYTHAHKDALIYYIDPK 172
L PD E +P L +A + L+ H+ ++GT P A + T AH+ +D
Sbjct: 146 LNPDGTLQLETLPTLFDAATRLLAITHVSNVLGTE---NPLAEMITLAHQHGAKVLVDGA 202
Query: 173 AKNAHLPQNVQCIN 186
H P +VQ ++
Sbjct: 203 QAVMHHPVDVQALD 216
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 26.6 bits (57), Expect = 2.2
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 4/74 (5%)
Query: 114 LRPDIVWFGEAVP-LLKEAISLVKQAHLLIIIGTSLQVYPAASLYTHAHKDALIYYIDPK 172
L PD E +P L E L+ H+ ++GT P A + T AH+ +D
Sbjct: 148 LNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTE---NPLAEMITLAHQHGAKVLVDGA 204
Query: 173 AKNAHLPQNVQCIN 186
H P +VQ ++
Sbjct: 205 QAVMHHPVDVQALD 218
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
Persulfide Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
Perselenide Intermediate (Residue Csz)
Length = 406
Score = 26.6 bits (57), Expect = 2.2
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 4/74 (5%)
Query: 114 LRPDIVWFGEAVP-LLKEAISLVKQAHLLIIIGTSLQVYPAASLYTHAHKDALIYYIDPK 172
L PD E +P L E L+ H+ ++GT P A + T AH+ +D
Sbjct: 146 LNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTE---NPLAEMITLAHQHGAKVLVDGA 202
Query: 173 AKNAHLPQNVQCIN 186
H P +VQ ++
Sbjct: 203 QAVMHHPVDVQALD 216
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 25.8 bits (55), Expect = 3.7
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Query: 81 GELLSVRSEKDPNLVYRWEKDLNLGDLAKDKSQLRPDIVWFGEAVPLLKEAISLVKQAH 139
G++L V +E+ Y+ E + G + K+ +++P WF +P K L KQ H
Sbjct: 22 GDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH-PWFFGKIPRAKAEEMLSKQRH 79
>pdb|1J77|A Chain A, Crystal Structure Of Gram-Negative Bacterial Heme
Oxygenase Complexed With Heme
Length = 209
Score = 25.8 bits (55), Expect = 3.7
Identities = 16/56 (28%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Query: 15 PYGWKKNPQKVLDFYNQRRRQLFEVYPN-KAHKALAELEKHYQVNIITQNVDDLHE 69
P+ K+N K L + + + +Y + + +KA+ ELE + + +TQ++ DL E
Sbjct: 35 PFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGE 90
>pdb|1AOZ|A Chain A, Ascorbate Oxidase (E.C.1.10.3.3)
pdb|1AOZ|B Chain B, Ascorbate Oxidase (E.C.1.10.3.3)
pdb|1ASO|A Chain A, Ascorbate Oxidase (Reduced Form) (E.C.1.10.3.3)
pdb|1ASO|B Chain B, Ascorbate Oxidase (Reduced Form) (E.C.1.10.3.3)
pdb|1ASQ|A Chain A, Ascorbate Oxidase (Azide Form) (E.C.1.10.3.3)
pdb|1ASQ|B Chain B, Ascorbate Oxidase (Azide Form) (E.C.1.10.3.3)
pdb|1ASP|A Chain A, Ascorbate Oxidase (Peroxide Form) (E.C.1.10.3.3)
pdb|1ASP|B Chain B, Ascorbate Oxidase (Peroxide Form) (E.C.1.10.3.3)
Length = 552
Score = 25.4 bits (54), Expect = 4.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 57 VNIITQNVDDLHERAGSSRILHLHGELLSVRSEKDPNLVYRWEKDLNL 104
V++I QN + + E + HLHG V D E LNL
Sbjct: 427 VDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNL 474
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp
Length = 368
Score = 25.4 bits (54), Expect = 4.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 81 GELLSVRSEKDPNLVYRWEKDLNLGDLAKDKSQL 114
G+ ++ E+ PN Y WE+D G + + Q+
Sbjct: 110 GKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQI 143
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 24.6 bits (52), Expect = 8.3
Identities = 13/32 (40%), Positives = 18/32 (55%), Gaps = 3/32 (9%)
Query: 19 KKNPQKVLD---FYNQRRRQLFEVYPNKAHKA 47
KKNPQ VLD FYN ++ + Y + K+
Sbjct: 49 KKNPQAVLDVLEFYNSKKTSNSQKYMSFTDKS 80
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,187,076
Number of Sequences: 13198
Number of extensions: 45693
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 13
length of query: 205
length of database: 2,899,336
effective HSP length: 84
effective length of query: 121
effective length of database: 1,790,704
effective search space: 216675184
effective search space used: 216675184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)