BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645874|ref|NP_208052.1| NADH-ubiquinone
oxidoreductase, NQO7 subunit (NQO7) [Helicobacter pylori 26695]
(133 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Bin... 28 0.36
pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Bi... 28 0.36
pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli >g... 27 0.61
pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Bind... 25 3.0
pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Lig... 24 5.1
pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand... 24 5.1
pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-B... 24 5.1
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Bi... 24 5.1
pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding ... 24 5.1
pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding ... 24 5.1
pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Al... 24 5.1
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Bi... 24 5.1
pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-B... 24 5.1
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol
Length = 271
Score = 28.1 bits (61), Expect = 0.36
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 46 EKLKLAPYECGP--VALKQPNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLF 100
E+L L E P V + +P+ +M L L D E+V M WA GF +L LF
Sbjct: 32 EQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLF 91
Query: 101 GLVEML 106
V +L
Sbjct: 92 DQVRLL 97
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 28.1 bits (61), Expect = 0.36
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 46 EKLKLAPYECGP--VALKQPNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLF 100
E+L L E P V + +P+ +M L L D E+V M WA GF +L LF
Sbjct: 12 EQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLF 71
Query: 101 GLVEML 106
V +L
Sbjct: 72 DQVRLL 77
>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
Length = 217
Score = 27.3 bits (59), Expect = 0.61
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 10 HPYFGV--FVLLVFTFWVFNLTLRIQRFLSRKMAQKKG--------EKLKLAPYECGPVA 59
HP+FG+ FV L+F F RF+ + KK E LK ++ V
Sbjct: 57 HPFFGIAIFVALMFMF---------VRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVG 107
Query: 60 LKQPNRVSHHFYIMAMLFILFDVEIVFMFPW 90
+ + IM+M+F+L ++ P+
Sbjct: 108 KYNAGQKMMFWSIMSMIFVLLVTGVIIWRPY 138
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 25.0 bits (53), Expect = 3.0
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 46 EKLKLAPYECGP--VALKQPNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLF 100
E+L L E P V + +P+ +M L L D E+V M WA GF +L L
Sbjct: 12 EQLVLTLLEAEPPNVLVSRPSMPFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSLL 71
Query: 101 GLVEML 106
V +L
Sbjct: 72 DQVRLL 77
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 33 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 92
Query: 118 Y 118
+
Sbjct: 93 W 93
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 248
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 30 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLV 89
Query: 118 Y 118
+
Sbjct: 90 W 90
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 33 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 92
Query: 118 Y 118
+
Sbjct: 93 W 93
>pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 40 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 99
Query: 118 Y 118
+
Sbjct: 100 W 100
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 37 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 96
Query: 118 Y 118
+
Sbjct: 97 W 97
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 33 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 92
Query: 118 Y 118
+
Sbjct: 93 W 93
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 30 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 89
Query: 118 Y 118
+
Sbjct: 90 W 90
>pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4-Hydroxytamoxifen
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 40 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 99
Query: 118 Y 118
+
Sbjct: 100 W 100
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 24.3 bits (51), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 63 PNRVSHHFYIMAMLFILFDVEIVFMFPWA---IGFKKLGLFGLVEML--GFVFFLTIGFI 117
P R +M +L L D E+V M WA GF L L V +L ++ L IG +
Sbjct: 29 PTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLV 88
Query: 118 Y 118
+
Sbjct: 89 W 89
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.335 0.147 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,175
Number of Sequences: 13198
Number of extensions: 21557
Number of successful extensions: 56
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 13
length of query: 133
length of database: 2,899,336
effective HSP length: 78
effective length of query: 55
effective length of database: 1,869,892
effective search space: 102844060
effective search space used: 102844060
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.5 bits)