BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645875|ref|NP_208053.1| NADH-ubiquinone
oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori 26695]
(159 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CC1|S Chain S, Crystal Structure Of A Reduced, Active ... 29 0.29
pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase ... 28 0.65
pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form ... 27 1.1
pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form ... 27 1.1
pdb|1E3D|A Chain A, [nife] Hydrogenase From Desulfovibrio D... 27 1.4
pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxyp... 27 1.4
pdb|1H2A|S Chain S, Single Crystals Of Hydrogenase From Des... 26 2.5
pdb|1H2R|S Chain S, Three-Dimensional Structure Of Ni-Fe Hy... 26 2.5
pdb|1KB9|E Chain E, Yeast Cytochrome Bc1 Complex >gi|142777... 25 4.2
>pdb|1CC1|S Chain S, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 283
Score = 28.9 bits (63), Expect = 0.29
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 65 IIAGTLTKK--HAE--FMRRLYDQMPEPKWVISMGSCANTGGMFNTYATVQGA------- 113
I+ TL K H E M + D P+ +++G+C+ GG+ V G+
Sbjct: 90 IVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFF 149
Query: 114 --DRVVPVDIYLPGCAPRPE 131
+++ + + +PGC P P+
Sbjct: 150 ADEKIEKLLVNVPGCPPHPD 169
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 27.7 bits (60), Expect = 0.65
Identities = 10/39 (25%), Positives = 22/39 (55%), Gaps = 6/39 (15%)
Query: 88 PKWVISMGSCANTGGMFNTY------ATVQGADRVVPVD 120
P WV++ G C +T + + +QG+++V+P++
Sbjct: 48 PDWVVTAGHCISTSRTYQVVLGEYDRSVLQGSEQVIPIN 86
>pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|E Chain E, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|G Chain G, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|I Chain I, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|S Chain S, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 26.9 bits (58), Expect = 1.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 11/63 (17%)
Query: 79 RRLYD----QMPEPKWVISMGSCANTGGM-------FNTYATVQGADRVVPVDIYLPGCA 127
R +YD P+ K VI++G+CA GG+ T + ++ I + GC
Sbjct: 90 RNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCP 149
Query: 128 PRP 130
P P
Sbjct: 150 PNP 152
>pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 26.9 bits (58), Expect = 1.1
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 11/63 (17%)
Query: 79 RRLYD----QMPEPKWVISMGSCANTGGM-------FNTYATVQGADRVVPVDIYLPGCA 127
R +YD P+ K VI++G+CA GG+ T + ++ I + GC
Sbjct: 90 RNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCP 149
Query: 128 PRP 130
P P
Sbjct: 150 PNP 152
>pdb|1E3D|A Chain A, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
pdb|1E3D|C Chain C, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 266
Score = 26.6 bits (57), Expect = 1.4
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 85 MPEPKWVISMGSCANTGGMFNTYATVQGADRVVPV-------DIYLPGCAPRP 130
+P+ K V+S+G+CA GG+ A + I +PGC P P
Sbjct: 102 LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNP 154
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 26.6 bits (57), Expect = 1.4
Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 88 PKWVISMGSCANTGGMFNTY------ATVQGADRVVPVD 120
P WV++ G C +T + + ++G+++V+P++
Sbjct: 35 PDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPIN 73
>pdb|1H2A|S Chain S, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
Length = 317
Score = 25.8 bits (55), Expect = 2.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 85 MPEPKWVISMGSCANTGGMFNTYATVQGADRVVPV-------DIYLPGCAPRPETL 133
+P+ + VI+ G+CA GG+ GA V I + GC P P L
Sbjct: 152 LPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNL 207
>pdb|1H2R|S Chain S, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 267
Score = 25.8 bits (55), Expect = 2.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 85 MPEPKWVISMGSCANTGGMFNTYATVQGADRVVPV-------DIYLPGCAPRPETL 133
+P+ + VI+ G+CA GG+ GA V I + GC P P L
Sbjct: 102 LPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNL 157
>pdb|1KB9|E Chain E, Yeast Cytochrome Bc1 Complex
pdb|1EZV|E Chain E, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|E Chain E, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|P Chain P, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 185
Score = 25.0 bits (53), Expect = 4.2
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 83 DQMPEPKWVISMGSCANTG 101
D++ +P+W+I +G C + G
Sbjct: 115 DRVKDPQWLIMLGICTHLG 133
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 942,389
Number of Sequences: 13198
Number of extensions: 37997
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 2,899,336
effective HSP length: 81
effective length of query: 78
effective length of database: 1,830,298
effective search space: 142763244
effective search space used: 142763244
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)