BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645879|ref|NP_208057.1| hypothetical protein
[Helicobacter pylori 26695]
(328 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 29 0.84
pdb|1JNI|A Chain A, Structure Of The Napb Subunit Of The Pe... 29 0.84
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 29 0.84
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 28 1.1
pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Ce... 27 4.2
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 28.9 bits (63), Expect = 0.84
Identities = 23/94 (24%), Positives = 48/94 (50%), Gaps = 4/94 (4%)
Query: 210 DFKDQEWLLETAFKEGILPFKSQLQS--KDLELLERI-SEANGSFVYVSYKSLETPKLSF 266
+F D + ++T +KE + KDL+ ++++ + N S ++YK++E + F
Sbjct: 96 NFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGF 155
Query: 267 SKQFKIANKIEHSKAGFQISNQTLECELEENPHL 300
+K N I +S A Q Q L+ +++ + +L
Sbjct: 156 NKSLTEGNTI-NSDAMAQFKEQFLDRDIKFDSYL 188
>pdb|1JNI|A Chain A, Structure Of The Napb Subunit Of The Periplasmic Nitrate
Reductase From Haemophilus Influenzae
Length = 123
Score = 28.9 bits (63), Expect = 0.84
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 260 ETPKLSFSKQFKIANKIEHSKAGFQIS---NQTLECELEENPHLKGLIAILEGAFFD 313
E P L++ Q + + HS A +Q++ NQ L C EN L G I F D
Sbjct: 28 ELPALNYVNQPPM---VPHSVANYQVTKNVNQCLNCHSPENSRLSGATRISPTHFMD 81
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 28.9 bits (63), Expect = 0.84
Identities = 23/94 (24%), Positives = 48/94 (50%), Gaps = 4/94 (4%)
Query: 210 DFKDQEWLLETAFKEGILPFKSQLQS--KDLELLERI-SEANGSFVYVSYKSLETPKLSF 266
+F D + ++T +KE + KDL+ ++++ + N S ++YK++E + F
Sbjct: 35 NFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGF 94
Query: 267 SKQFKIANKIEHSKAGFQISNQTLECELEENPHL 300
+K N I +S A Q Q L+ +++ + +L
Sbjct: 95 NKSLTEGNTI-NSDAMAQFKEQFLDRDIKFDSYL 127
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 28.5 bits (62), Expect = 1.1
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 13 ASSSLSLKEAYYLEKLSLKKGFKIHYKMTKDSLNLLEKSDLCVLFGGFSNACLNENERWI 72
+S LS +E +L+KL + +DSL+ EK L + SN L+E E+
Sbjct: 326 SSDFLSTEEKEFLKKLQID---------IRDSLSEEEKELLNRIQVDSSNP-LSEKEKEF 375
Query: 73 LESISHSKRPYALLRPLQDTRDL 95
L+ + +PY + + LQDT L
Sbjct: 376 LKKLKLDIQPYDINQRLQDTGGL 398
>pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|B Chain B, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|C Chain C, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|D Chain D, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|E Chain E, Lumazine Synthase From Saccharomyces Cerevisiae
Length = 168
Score = 26.6 bits (57), Expect = 4.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 30 LKKGFKIHYKMTKDS-----LNLLEKSDLCVLFGGFSNACLNENE 69
L KG +H++ DS +NL EK D+ V+FG + C+ E +
Sbjct: 90 LIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLT--CMTEEQ 132
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,735,884
Number of Sequences: 13198
Number of extensions: 65452
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 5
length of query: 328
length of database: 2,899,336
effective HSP length: 89
effective length of query: 239
effective length of database: 1,724,714
effective search space: 412206646
effective search space used: 412206646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)