BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645881|ref|NP_208059.1| NADH-ubiquinone
oxidoreductase, NQO8 subunit (NQO8) [Helicobacter pylori 26695]
         (329 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JYS|A  Chain A, Crystal Structure Of E. Coli MtaADOHCY ...    26  5.4

>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
 pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
          Length = 242

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 2/49 (4%)

Query: 136 AGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEINH 184
           AG  +++K  LI +A A I  L+   V  L +     + GS+ L +I H
Sbjct: 127 AGFKADDK--LIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRH 173



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.332    0.147    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,745,492
Number of Sequences: 13198
Number of extensions: 70131
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 1
length of query: 329
length of database: 2,899,336
effective HSP length: 89
effective length of query: 240
effective length of database: 1,724,714
effective search space: 413931360
effective search space used: 413931360
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)