BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645882|ref|NP_208060.1| NADH-ubiquinone
oxidoreductase, NQO9 subunit (NQO9) [Helicobacter pylori 26695]
(220 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Uri... 44 1e-05
pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c V... 43 2e-05
pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxi... 43 3e-05
pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 39 4e-04
pdb|1FCA| Ferredoxin 39 4e-04
pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 39 4e-04
pdb|1CLF| Clostridium Pasteurianum Ferredoxin 37 0.002
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 36 0.004
pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli >g... 35 0.007
pdb|1XER| Structure Of Ferredoxin 34 0.015
pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-On... 33 0.020
pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pa... 31 0.098
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 31 0.098
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 31 0.098
pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With ... 31 0.13
pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Ma... 30 0.17
pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chro... 30 0.22
pdb|1H98|A Chain A, New Insights Into Thermostability Of Ba... 30 0.29
pdb|1FRI| Ferredoxin (Fdi) Mutant With Asp 23 Replaced By... 29 0.49
pdb|1FRM| Ferredoxin (Fdi) Mutant With Glu 46 Replaced By... 29 0.49
pdb|1FRJ| Ferredoxin (Fdi) Mutant With Phe 25 Replaced By... 28 0.64
pdb|1A6L| T14c Mutant Of Azotobacter Vinelandii Fdi 28 0.64
pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From ... 28 1.1
pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Fer... 27 1.4
pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A P... 27 1.4
pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELAND... 27 1.9
pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 M... 27 1.9
pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii F... 27 1.9
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinela... 27 1.9
pdb|1FRK| Ferredoxin (Fdi) Mutant With His 35 Replaced By... 27 1.9
pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e ... 27 1.9
pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxid... 27 1.9
pdb|1FDD| Ferredoxin Mutant With Asp 15 Replaced By Asn (... 27 1.9
pdb|1FRH| Ferredoxin (Fdi) Mutant With Phe 2 Replaced By ... 27 1.9
pdb|1FRL| Ferredoxin (Fdi) Mutant With Glu 38 Replaced By... 27 2.4
pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 ... 26 3.2
pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Fer... 25 7.0
pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Recep... 25 7.0
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase F... 25 9.2
pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of... 25 9.2
>pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
pdb|1FDN| Ferredoxin
Length = 55
Score = 44.3 bits (103), Expect = 1e-05
Identities = 23/54 (42%), Positives = 26/54 (47%), Gaps = 10/54 (18%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
+E CI CG CE C N I G+D Y I+ CI CG CA VCP
Sbjct: 5 NEACISCGACEPECPVNAIS----SGDDR------YVIDADTCIDCGACAGVCP 48
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 113 SYTINLGRCIYCGLCAEVCPELAIVMGN 140
+Y IN CI CG C CP AI G+
Sbjct: 1 AYVINEA-CISCGACEPECPVNAISSGD 27
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 43.1 bits (100), Expect = 2e-05
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 79 SERCIG--CGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
+E CIG C C ++C +CI H+GED Y I+ CI CG C VCP AI
Sbjct: 5 TEPCIGTKCASCVEVCPVDCI----HEGEDQ------YYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 42.7 bits (99), Expect = 3e-05
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
++ CI CG C+ C NCI+ + Y I+ CI CG CA VCP
Sbjct: 5 NDSCIACGACKPECPVNCIQ-----------EGSIYAIDADSCIDCGSCASVCP 47
Score = 24.6 bits (52), Expect = 9.2
Identities = 12/28 (42%), Positives = 14/28 (49%), Gaps = 1/28 (3%)
Query: 113 SYTINLGRCIYCGLCAEVCPELAIVMGN 140
+Y IN CI CG C CP I G+
Sbjct: 1 AYVIN-DSCIACGACKPECPVNCIQEGS 27
>pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20 Structures
Length = 77
Score = 39.3 bits (90), Expect = 4e-04
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 79 SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
+E CIG C ++C +CI H+GED Y I+ CI CG C VCP AI
Sbjct: 5 TEPCIGTKDASCVEVCPVDCI----HEGEDQ------YYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1FCA| Ferredoxin
Length = 55
Score = 39.3 bits (90), Expect = 4e-04
Identities = 21/54 (38%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
+E CI CG CE C + I+ G Y I+ CI CG CA VCP
Sbjct: 5 NEACISCGACEPECP---VDAISQGGS-------RYVIDADTCIDCGACAGVCP 48
Score = 25.8 bits (55), Expect = 4.1
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 113 SYTINLGRCIYCGLCAEVCPELAIVMG 139
+Y IN CI CG C CP AI G
Sbjct: 1 AYVINEA-CISCGACEPECPVDAISQG 26
>pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized Average
Structure
Length = 77
Score = 39.3 bits (90), Expect = 4e-04
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 79 SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
+E CIG C ++C +CI H+GED Y I+ CI CG C VCP AI
Sbjct: 5 TEPCIGTKDASCVEVCPVDCI----HEGEDQ------YYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1CLF| Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 36.6 bits (83), Expect = 0.002
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
++ C+ CG C C N I +G+ + I+ CI CG CA VCP
Sbjct: 5 ADSCVSCGACASECPVNAIS----QGDS------IFVIDADTCIDCGNCANVCP 48
Score = 27.3 bits (59), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 121 CIYCGLCAEVCPELAIVMGN 140
C+ CG CA CP AI G+
Sbjct: 8 CVSCGACASECPVNAISQGD 27
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 35.8 bits (81), Expect = 0.004
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 19/78 (24%)
Query: 80 ERCIGCGLCEKICTSNCIRIITHKGED-------------NRKKIDSYT----INLGRCI 122
E CI C C +C + I + K E+ K++ Y IN C+
Sbjct: 686 ENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCM 745
Query: 123 YCGLCAEVCP--ELAIVM 138
CG CA++CP E A+VM
Sbjct: 746 GCGNCADICPPKEKALVM 763
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 35.0 bits (79), Expect = 0.007
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 3/70 (4%)
Query: 74 LLDSGSERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPE 133
++D SE CIGCG C C N R+ EDNR + ++ C + CP
Sbjct: 125 IVDFQSENCIGCGYCIAGCPFNIPRL---NKEDNRVYKCTLCVDRVSVGQEPACVKTCPT 181
Query: 134 LAIVMGNRFE 143
AI G + E
Sbjct: 182 GAIHFGTKKE 191
>pdb|1XER| Structure Of Ferredoxin
Length = 103
Score = 33.9 bits (76), Expect = 0.015
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 82 CIGCGLCEKICTSNCIRIITHKGED-NRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
CI G C C N + G + KK D +N CI+C C VCP AI
Sbjct: 45 CIADGSCINACPVNVFQWYDTPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 98
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 33.5 bits (75), Expect = 0.020
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 8/56 (14%)
Query: 81 RCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
+CIGC C + C + I GE + ++ CI CG C CPE AI
Sbjct: 34 KCIGCDTCSQYCPTAAI--FGEMGEPHSIP------HIEACINCGQCLTHCPENAI 81
Score = 26.2 bits (56), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 110 KIDSYTINLGRCIYCGLCAEVCPELAI 136
K+ I+ +CI C C++ CP AI
Sbjct: 24 KLHFVQIDEAKCIGCDTCSQYCPTAAI 50
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
Length = 574
Score = 31.2 bits (69), Expect = 0.098
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 81 RCIGCGLCEKICTSN----CIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
+C+ CG C C N ++ + G+ D + C+ CG C CP A+
Sbjct: 146 KCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAAL 205
Score = 25.8 bits (55), Expect = 4.1
Identities = 12/39 (30%), Positives = 18/39 (45%), Gaps = 2/39 (5%)
Query: 106 DNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGNRFEN 144
D R K S T++ +C+ CG C C + +F N
Sbjct: 134 DERSK--SLTVDRTKCLLCGRCVNACGKNTETYAMKFLN 170
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 31.2 bits (69), Expect = 0.098
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 80 ERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
E CI CG C C + + I E + + C C LC VCP
Sbjct: 951 EMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTD------TCTGCTLCLSVCP 997
Score = 25.8 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Query: 75 LDSGSERCIGCGLCEKIC-TSNCIRIIT 101
L + ++ C GC LC +C +CIR+++
Sbjct: 979 LPTVTDTCTGCTLCLSVCPIIDCIRMVS 1006
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 31.2 bits (69), Expect = 0.098
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 80 ERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
E CI CG C C + + I E + + C C LC VCP
Sbjct: 951 EMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTD------TCTGCTLCLSVCP 997
Score = 25.8 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Query: 75 LDSGSERCIGCGLCEKIC-TSNCIRIIT 101
L + ++ C GC LC +C +CIR+++
Sbjct: 979 LPTVTDTCTGCTLCLSVCPIIDCIRMVS 1006
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|B Chain B, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|N Chain N, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 243
Score = 30.8 bits (68), Expect = 0.13
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 82 CIGCGLCEKICTS----------NCIRIITHKGEDNR---KKIDSYTIN----LGRCIYC 124
CI CGLC C I + ED+R KK +N + C +
Sbjct: 148 CINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 207
Query: 125 GLCAEVCPE 133
G C+EVCP+
Sbjct: 208 GYCSEVCPK 216
Score = 27.7 bits (60), Expect = 1.1
Identities = 23/96 (23%), Positives = 40/96 (40%), Gaps = 20/96 (20%)
Query: 121 CIYCGLCAEVCPEL----------AIVMGNRFENASTQRSQYGSKSEFLTSEQDAKNCSH 170
CI CGLC CP+ AI + +R+ S + ++ L S+ +C+
Sbjct: 148 CINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQ-LNSQNGVWSCT- 205
Query: 171 AEFLGF-GAVSPNYNERMQATPLDYVQEPSKEESQE 205
F+G+ V P + P +Q+ E S++
Sbjct: 206 --FVGYCSEVCPKH-----VDPAAAIQQGKVESSKD 234
>pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Maritima
pdb|1VJW| Structure Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
Length = 60
Score = 30.4 bits (67), Expect = 0.17
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKI 111
++ CIGCG+CE +C + G+D + K+
Sbjct: 7 ADACIGCGVCENLCPD-----VFQLGDDGKAKV 34
Score = 25.8 bits (55), Expect = 4.1
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 116 INLGRCIYCGLCAEVCPEL 134
++ CI CG+C +CP++
Sbjct: 5 VDADACIGCGVCENLCPDV 23
>pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chromatium Vinosum
Length = 82
Score = 30.0 bits (66), Expect = 0.22
Identities = 21/81 (25%), Positives = 33/81 (39%), Gaps = 17/81 (20%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYC------GLCAEVCP 132
++ CI C +CE C + I +G+ ++Y I C C C EVCP
Sbjct: 5 TDECINCDVCEPECPNGAI----SQGD------ETYVIEPSLCTECVGHYETSQCVEVCP 54
Query: 133 ELAIVMGNRFENASTQ-RSQY 152
I+ E + R++Y
Sbjct: 55 VDCIIKDPSHEETEDELRAKY 75
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 29.6 bits (65), Expect = 0.29
Identities = 20/59 (33%), Positives = 25/59 (41%), Gaps = 12/59 (20%)
Query: 80 ERCIGCG--LCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
E CIG C ++C CI + G D + I+ CI CG C CP AI
Sbjct: 6 EPCIGVKDQSCVEVCPVECI----YDGGDQ------FYIHPEECIDCGACVPACPVNAI 54
>pdb|1FRI| Ferredoxin (Fdi) Mutant With Asp 23 Replaced By Asn (D23n)
Length = 106
Score = 28.9 bits (63), Expect = 0.49
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C NC ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVNCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1FRM| Ferredoxin (Fdi) Mutant With Glu 46 Replaced By Ala (E46a)
Length = 106
Score = 28.9 bits (63), Expect = 0.49
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LCA CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCAPECPAQAI 54
>pdb|1FRJ| Ferredoxin (Fdi) Mutant With Phe 25 Replaced By Ile (F25i)
Length = 106
Score = 28.5 bits (62), Expect = 0.64
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +CI ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCI----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1A6L| T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 28.5 bits (62), Expect = 0.64
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGLCE--KICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C+ ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYCDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
pdb|1G99|B Chain B, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
Length = 408
Score = 27.7 bits (60), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 73 RLLDSGSERCIGCGLCEKICTSNCIRIITHKGEDNRK 109
+L+D +E + GLCE+I N IIT K D +K
Sbjct: 16 QLIDMTNESALAVGLCERIGIDN--SIITQKKFDGKK 50
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 27.3 bits (59), Expect = 1.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCESECPAQAI 54
>pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 80
Score = 27.3 bits (59), Expect = 1.4
Identities = 13/53 (24%), Positives = 22/53 (40%), Gaps = 2/53 (3%)
Query: 80 ERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
+ CIGC C + C ++ + ++ G + S C+ C C CP
Sbjct: 8 DTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTE--DCVGCKRCETACP 58
Score = 26.9 bits (58), Expect = 1.9
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKI 111
+E C+GC CE C ++ + I + G + + +
Sbjct: 44 TEDCVGCKRCETACPTDFLSIRVYLGAETTRSM 76
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTKCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKXTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
K, 1.35 A
pdb|6FD1| 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35
A
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|5FD1| Ferredoxin (Oxidized) At Ph 8
pdb|1AXQ| Ferricyanide Oxidized Fdi
pdb|1FDA| Ferredoxin (Oxidized) At Ph 6
pdb|1FDB| Ferredoxin (Reduced) At Ph 6
pdb|1FER| Ferredoxin I (Ph 6.5)
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1FRK| Ferredoxin (Fdi) Mutant With His 35 Replaced By Asp (H35d)
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIDPDECIDCALCEPECPAQAI 54
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTECVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem I
Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 26.9 bits (58), Expect = 1.9
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKI 111
+E C+GC CE C ++ + I + G + + +
Sbjct: 44 TEDCVGCKRCETACPTDFLSIRVYLGAETTRSM 76
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 80 ERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
+ CIGC C + C + + ++ G + S C+ C C CP
Sbjct: 8 DTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTE--DCVGCKRCETACP 58
>pdb|1FDD| Ferredoxin Mutant With Asp 15 Replaced By Asn (D15n)
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTNCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1FRH| Ferredoxin (Fdi) Mutant With Phe 2 Replaced By Tyr (F2y)
Length = 106
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1FRL| Ferredoxin (Fdi) Mutant With Glu 38 Replaced By Ser (E38s)
Length = 106
Score = 26.6 bits (57), Expect = 2.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDSCIDCALCEPECPAQAI 54
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 26.2 bits (56), Expect = 3.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C + + + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDC----------HYEGPNFLVIHPDECIDCALCEPECPAQAI 54
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 25.0 bits (53), Expect = 7.0
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C + C C ++G + I+ CI C LC CP AI
Sbjct: 5 TDNCIKCKYTD--CVEECPVDCFYEGPN------FLVIHPDECIDCALCEPECPAQAI 54
>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Length = 478
Score = 25.0 bits (53), Expect = 7.0
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 81 RCIGCGLCEKICT---SNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPEL 134
RC+ C I + S+ + H GE ++ + N + +YC C CP++
Sbjct: 245 RCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKV 301
Score = 24.6 bits (52), Expect = 9.2
Identities = 16/62 (25%), Positives = 22/62 (34%), Gaps = 10/62 (16%)
Query: 81 RCIGCGLCEKICTSNC-IRIITHK---------GEDNRKKIDSYTINLGRCIYCGLCAEV 130
RC C+K+C S C R T G + D+ + Y G+C
Sbjct: 174 RCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPA 233
Query: 131 CP 132
CP
Sbjct: 234 CP 235
>pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
Length = 483
Score = 24.6 bits (52), Expect = 9.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 142 FENASTQRSQYGSKSEFLTSEQDAKNCSHAEFLG-FGAVSPNYNERMQAT---------P 191
F+ T R++YG+KSE QDA H+ + +G V N+ AT P
Sbjct: 65 FQQKGTVRTKYGTKSEL----QDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNP 120
Query: 192 LDYVQEPSKE 201
+ QE S+E
Sbjct: 121 ANRNQETSEE 130
>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
Length = 106
Score = 24.6 bits (52), Expect = 9.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 79 SERCIGCGL--CEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136
++ CI C C ++C +C ++G + I+ CI C C CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCF----YEGPN------FLVIHPDECIDCASCEPECPAQAI 54
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,315,112
Number of Sequences: 13198
Number of extensions: 52489
Number of successful extensions: 186
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 73
length of query: 220
length of database: 2,899,336
effective HSP length: 85
effective length of query: 135
effective length of database: 1,777,506
effective search space: 239963310
effective search space used: 239963310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)