BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645884|ref|NP_208062.1| NADH-ubiquinone
oxidoreductase, NQO11 subunit (NQO11) [Helicobacter pylori 26695]
(100 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 1.7
pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hex... 25 1.7
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With ... 25 1.7
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 1.7
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 1.7
pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human ... 25 1.7
pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hex... 25 1.7
pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas M... 23 3.9
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex >gi|142777... 23 5.1
pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex Wit... 23 5.1
pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase... 22 8.6
pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Ki... 22 8.6
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 34 STEIMLNAINIGFVAISKYTHNLDG 58
STE + +N+ + Y HNLDG
Sbjct: 502 STEFLTPILNLARIVEVTYIHNLDG 526
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 24.6 bits (52), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLD 91
F S + ++ G++I W K FK+ D
Sbjct: 600 FTFSFPCQQTSLDAGILITWTKGFKATD 627
Score = 23.5 bits (49), Expect = 3.9
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLDIDSLNAMK 99
F S + I ++I W K+FK+ ++ + +K
Sbjct: 152 FTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVK 187
>pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
Length = 917
Score = 24.6 bits (52), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLD 91
F S + ++ G++I W K FK+ D
Sbjct: 600 FTFSFPCQQTSLDAGILITWTKGFKATD 627
Score = 23.5 bits (49), Expect = 3.9
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLDIDSLNAMK 99
F S + I ++I W K+FK+ ++ + +K
Sbjct: 152 FTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVK 187
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 34 STEIMLNAINIGFVAISKYTHNLDG 58
STE + +N+ + Y HNLDG
Sbjct: 502 STEFLTPILNLARIVEVTYIHNLDG 526
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 34 STEIMLNAINIGFVAISKYTHNLDG 58
STE + +N+ + Y HNLDG
Sbjct: 502 STEFLTPILNLARIVEVTYIHNLDG 526
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 24.6 bits (52), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLD 91
F S + ++ G++I W K FK+ D
Sbjct: 600 FTFSFPCQQTSLDAGILITWTKGFKATD 627
Score = 23.5 bits (49), Expect = 3.9
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLDIDSLNAMK 99
F S + I ++I W K+FK+ ++ + +K
Sbjct: 152 FTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVK 187
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 24.6 bits (52), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLD 91
F S + ++ G++I W K FK+ D
Sbjct: 600 FTFSFPCQQTSLDAGILITWTKGFKATD 627
Score = 23.5 bits (49), Expect = 3.9
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLDIDSLNAMK 99
F S + I ++I W K+FK+ ++ + +K
Sbjct: 152 FTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVK 187
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 23.5 bits (49), Expect = 3.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 2 IGLNHYLIVSGLLFCIGLAGMLKRKNILLLFFSTEIMLNAINIGFVA 48
IGL H+ V+G + L +L KN+ ++ N +N GF A
Sbjct: 16 IGLKHHFAVAGDYNLVLLDNLLLNKNMEQVY-----CCNELNCGFSA 57
>pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 352
Score = 23.1 bits (48), Expect = 5.1
Identities = 12/46 (26%), Positives = 23/46 (49%)
Query: 45 GFVAISKYTHNLDGQMFALFIISIAASEVAIGLGLVILWFKKFKSL 90
G ++ +K DG +F LF+ ++ V+ + ++ KK K L
Sbjct: 253 GLISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKKGKDL 298
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 919
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLDID 93
F S + + G++I W K FK+ D +
Sbjct: 601 FTFSFPCHQTNLDCGILISWTKGFKATDCE 630
Score = 22.7 bits (47), Expect = 6.6
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 64 FIISIAASEVAIGLGLVILWFKKFKSLDIDSLNAMK 99
F S + I ++I W K+FK+ ++ + +K
Sbjct: 152 FTFSFPCRQSKIDEAVLITWTKRFKASGVEGADVVK 187
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 22.3 bits (46), Expect = 8.6
Identities = 9/34 (26%), Positives = 17/34 (49%)
Query: 30 LLFFSTEIMLNAINIGFVAISKYTHNLDGQMFAL 63
L+F++T L A + ++ Y H + +F L
Sbjct: 162 LIFYATAYTLTATPKNALEVAGYAHGIPNAIFTL 195
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 22.3 bits (46), Expect = 8.6
Identities = 9/34 (26%), Positives = 17/34 (49%)
Query: 30 LLFFSTEIMLNAINIGFVAISKYTHNLDGQMFAL 63
L+F++T L A + ++ Y H + +F L
Sbjct: 162 LIFYATAYTLTATPKNALEVAGYAHGIPNAIFTL 195
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.332 0.147 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,744
Number of Sequences: 13198
Number of extensions: 12797
Number of successful extensions: 51
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 17
length of query: 100
length of database: 2,899,336
effective HSP length: 76
effective length of query: 24
effective length of database: 1,896,288
effective search space: 45510912
effective search space used: 45510912
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)