BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645887|ref|NP_208065.1| NADH-ubiquinone
oxidoreductase, NQO14 subunit (NQO14) [Helicobacter pylori 26695]
         (490 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JB0|B  Chain B, Crystal Structure Of Photosystem I: A P...    27  5.2

>pdb|1JB0|B Chain B, Crystal Structure Of Photosystem I: A Photosynthetic
           Reaction Center And Core Antenna System From
           Cyanobacteria
          Length = 740

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 1/53 (1%)

Query: 228 LVPFHTWMPDVYEGNNPVFASYISIVPKIAGFVVATRLFGAFIDTRTAWVEDI 280
           L PF T    VY   NP  AS++    + AG  + T L G    T + W+ D+
Sbjct: 221 LAPFFTGNWGVY-AQNPDTASHVFGTAQGAGTAILTFLGGFHPQTESLWLTDM 272



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.333    0.144    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,471,083
Number of Sequences: 13198
Number of extensions: 92189
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 1
length of query: 490
length of database: 2,899,336
effective HSP length: 92
effective length of query: 398
effective length of database: 1,685,120
effective search space: 670677760
effective search space used: 670677760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.2 bits)