BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645889|ref|NP_208067.1| phosphomannomutase
(algC){Pseudomonas aeruginosa} [Helicobacter pylori 26695]
(459 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase... 298 7e-82
pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase... 288 1e-78
pdb|3PMG|A Chain A, Phosphoglucomutase Mol_id: 1; Molecule:... 54 3e-08
pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase >gi|19... 53 8e-08
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensiti... 45 2e-05
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 27 3.7
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase >... 27 4.8
pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Syn... 27 6.3
pdb|1LNR|D Chain D, Crystal Structure Of The Large Ribosoma... 26 8.2
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The... 26 8.2
pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 Fr... 26 8.2
>pdb|1K2Y|X Chain X, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE
S108a Mutant From P. Aeruginosa
Length = 463
Score = 298 bits (764), Expect = 7e-82
Identities = 178/457 (38%), Positives = 264/457 (56%), Gaps = 18/457 (3%)
Query: 4 SIFREYDIRGIYPTTLDEKGAFSIGVELG-KIMRECDKSVFVGHDARVHGRFLFEALSAG 62
SIFR YDIRG+ TL + A+ IG +G + + + V VG D R+ G L + L G
Sbjct: 12 SIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQG 71
Query: 63 LQSSGLKVYDLGLIPTPVAYFAAFNEINGIQCPNSIMITGSHNPKEYNGFKITLNQNPFY 122
L G +V D+G++PTPV Y+AA N ++ + +M+TG+HNP +YNGFKI +
Sbjct: 72 LVDCGCQVSDVGMVPTPVLYYAA----NVLEGKSGVMLTGAHNPPDYNGFKIVVAGETLA 127
Query: 123 GKDIQALKDTLLNAKHEIKPLKEIPEKANALEAYQRYLIKDFKHLKNLKYKIALDFGNGV 182
+ IQAL++ + K+++ E+ + L Y + + D K +K + +D GNGV
Sbjct: 128 NEQIQALRERI--EKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMK--VVVDCGNGV 183
Query: 183 GALGLEPILKALNIDFNSLYSDPDGNFPNHHPDPSEAKNLKDLEKHMQENAISIGFAFDG 242
+ +++AL LY + DGNFPNHHPDP + +NLKDL ++ +G AFDG
Sbjct: 184 AGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDG 243
Query: 243 DADRIAML-SSHHVYAGDELAILFAKRLHAQGITPFVIGEVKCSQVMYNTINTF-GKTLM 300
D DR+ ++ ++ + D L +LFAK + ++ +I +VKC++ + I+ + G+ +M
Sbjct: 244 DGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVM 303
Query: 301 YKTGHSNLKIKLKETHAHFAAEMSGHIFFKERYFGYDDALYACLRALELLLEQTPSDLEN 360
+KTGHS +K K+KET A A EMSGH+FFKER+FG+DD +Y+ R LE +L Q D E+
Sbjct: 304 WKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLE-ILSQDQRDSEH 362
Query: 361 TIKNLPYSYTTPEEKIAVSEEEKFEIIHNLQETLKNPPSHFPKIKEIISIDGVRVVFEHG 420
P +TPE I V+E+ KF II LQ + + I ++DGVRV + G
Sbjct: 363 VFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGN------ITTLDGVRVDYPKG 416
Query: 421 FGLIRASNTTPYLVSRFEGKDETTALEYKRALLNLLE 457
+GL+RASNTTP LV RFE E K N L+
Sbjct: 417 WGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLK 453
>pdb|1K35|A Chain A, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE
From P.Aeruginosa
Length = 463
Score = 288 bits (736), Expect = 1e-78
Identities = 175/457 (38%), Positives = 256/457 (55%), Gaps = 18/457 (3%)
Query: 4 SIFREYDIRGIYPTTLDEKGAFSIGVELG-KIMRECDKSVFVGHDARVHGRFLFEALSAG 62
SIFR YDIRG+ TL + A+ IG +G + + + V VG D R+ G L + L G
Sbjct: 12 SIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQG 71
Query: 63 LQSSGLKVYDLGLIPTPVAYFAAFNEINGIQCPNSIMITGSHNPKEYNGFKITLNQNPFY 122
L G +V D+G +PTPV Y+AA N ++ + + +TG HNP +YNGFKI +
Sbjct: 72 LVDCGCQVSDVGXVPTPVLYYAA----NVLEGKSGVXLTGXHNPPDYNGFKIVVAGETLA 127
Query: 123 GKDIQALKDTLLNAKHEIKPLKEIPEKANALEAYQRYLIKDFKHLKNLKYKIALDFGNGV 182
+ IQAL++ + K+++ E+ + L Y + + D K K+ +D GNGV
Sbjct: 128 NEQIQALRERI--EKNDLASGVGSVEQVDILPRYFKQIRDDIAXAK--PXKVVVDCGNGV 183
Query: 183 GALGLEPILKALNIDFNSLYSDPDGNFPNHHPDPSEAKNLKDLEKHMQENAISIGFAFDG 242
+ +++AL LY + DGNFPNHHPDP + +NLKDL ++ +G AFDG
Sbjct: 184 AGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDG 243
Query: 243 DADRIAML-SSHHVYAGDELAILFAKRLHAQGITPFVIGEVKCSQVMYNTINTF-GKTLM 300
D DR+ ++ ++ + D L LFAK + ++ +I +VKC++ + I+ + G+ +
Sbjct: 244 DGDRVGVVTNTGTIIYPDRLLXLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVX 303
Query: 301 YKTGHSNLKIKLKETHAHFAAEMSGHIFFKERYFGYDDALYACLRALELLLEQTPSDLEN 360
+KTGHS +K K KET A A E SGH+FFKER+FG+DD +Y+ R LE +L Q D E+
Sbjct: 304 WKTGHSLIKKKXKETGALLAGEXSGHVFFKERWFGFDDGIYSAARLLE-ILSQDQRDSEH 362
Query: 361 TIKNLPYSYTTPEEKIAVSEEEKFEIIHNLQETLKNPPSHFPKIKEIISIDGVRVVFEHG 420
P +TPE I V+E+ KF II LQ + + I ++DGVRV + G
Sbjct: 363 VFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGN------ITTLDGVRVDYPKG 416
Query: 421 FGLIRASNTTPYLVSRFEGKDETTALEYKRALLNLLE 457
+GL+RASNTTP LV RFE E K N L+
Sbjct: 417 WGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLK 453
>pdb|3PMG|A Chain A, Phosphoglucomutase Mol_id: 1; Molecule:
Alpha-D-Glucose-1,6-Bisphosphate; Chain: A, B; Synonym:
Phosphoglucomutase; Ec: 5.4.2.2; Heterogen: Mg
pdb|3PMG|B Chain B, Phosphoglucomutase Mol_id: 1; Molecule:
Alpha-D-Glucose-1,6-Bisphosphate; Chain: A, B; Synonym:
Phosphoglucomutase; Ec: 5.4.2.2; Heterogen: Mg
pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 54.3 bits (129), Expect = 3e-08
Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 48/269 (17%)
Query: 39 DKSVFVGHDARVHGRFLFEALSAGLQSSG---LKVYDLGLIPTPVAYFAAFNEINGIQCP 95
+ ++ VG D R + + + + ++G L + G++ TP A I I+
Sbjct: 53 EATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTP----AVSCIIRKIKAI 108
Query: 96 NSIMITGSHNPKEYNG-FKITLNQN--------------------------PFYGKDIQA 128
I++T SHNP NG F I N + P D+
Sbjct: 109 GGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGV 168
Query: 129 LKDTLLNAKHEIKPLKEIPEKANALEAYQRYL--IKDFKHLKNL-----KYKIALDFGNG 181
L + +++ KP E +++EAY L I DF LK L + KI +D +G
Sbjct: 169 LGKQQFDLENKFKPFTV--EIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHG 226
Query: 182 VGALGLEPIL-KALNIDFNSLYSD-PDGNFPNHHPDPSEAKNLKDLEKHMQENAISIGFA 239
V ++ IL + L NS + P +F HHPDP+ DL + M+ G A
Sbjct: 227 VVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPN-LTYAADLVETMKSGEHDFGAA 285
Query: 240 FDGDADRIAMLSSH--HVYAGDELAILFA 266
FDGD DR +L H V D +A++ A
Sbjct: 286 FDGDGDRNMILGKHGFFVNPSDSVAVIAA 314
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
Length = 561
Score = 52.8 bits (125), Expect = 8e-08
Identities = 72/269 (26%), Positives = 111/269 (40%), Gaps = 48/269 (17%)
Query: 39 DKSVFVGHDARVHGRFLFEALSAGLQSSG---LKVYDLGLIPTPVAYFAAFNEINGIQCP 95
+ ++ VG D R + + + + ++G L + G++ TP A I I+
Sbjct: 53 EATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTP----AVSCIIRKIKAI 108
Query: 96 NSIMITGSHNPKEYNG-FKITLNQN--------------------------PFYGKDIQA 128
I++T HNP NG F I N + P D+
Sbjct: 109 GGIILTAXHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGV 168
Query: 129 LKDTLLNAKHEIKPLKEIPEKANALEAYQRYL--IKDFKHLKNL-----KYKIALDFGNG 181
L + +++ KP E +++EAY L I DF LK L + KI +D +G
Sbjct: 169 LGKQQFDLENKFKPFTV--EIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHG 226
Query: 182 VGALGLEPIL-KALNIDFNSLYSD-PDGNFPNHHPDPSEAKNLKDLEKHMQENAISIGFA 239
V ++ IL + L NS + P +F HHPDP+ DL + M+ G A
Sbjct: 227 VVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPN-LTYAADLVETMKSGEHDFGAA 285
Query: 240 FDGDADRIAMLSSH--HVYAGDELAILFA 266
FDGD DR +L H V D +A++ A
Sbjct: 286 FDGDGDRNMILGKHGFFVNPSDSVAVIAA 314
>pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
Length = 572
Score = 44.7 bits (104), Expect = 2e-05
Identities = 74/275 (26%), Positives = 103/275 (36%), Gaps = 51/275 (18%)
Query: 42 VFVGHDARVHGR---FLFEALSAGLQSSGLKVYDLGLIPTPVA--YFAAFNEINGIQCPN 96
+FVG D R R F L+ S + V GL+ TP + Y NE G C
Sbjct: 61 LFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVG-NCIG 119
Query: 97 SIMITGSHNP--KEYNGFKITLNQ---------------------NPFYGKDIQALKDTL 133
I++T SHNP KE+ F I N + D + K
Sbjct: 120 GIILTASHNPGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHIN 179
Query: 134 LNA----KHEIKPLKEIPEKANALEAYQRYL-----IKDFKHLK----NLKYKIALDFGN 180
L+ K E L++ + ++ Q Y + DF LK N + D +
Sbjct: 180 LDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMH 239
Query: 181 GVGALGLEPIL-KALNIDFNSLYS-DPDGNFPNHHPDPS-----EAKNLKDLEKHMQENA 233
GV + I L SL + DP +F HPDP+ + L D+ K
Sbjct: 240 GVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGT 299
Query: 234 I-SIGFAFDGDADRIAMLS-SHHVYAGDELAILFA 266
+ G A DGDADR +L V D LA++ A
Sbjct: 300 VPQFGAACDGDADRNMILGRQFFVTPSDSLAVIAA 334
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 27.3 bits (59), Expect = 3.7
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 23/100 (23%)
Query: 350 LLEQTPSDLENTIKNLPYSYTTP----------EEKIAVSEEEKFEIIHNLQETLKNPPS 399
LL+ + ++LE + Y P E++ +++EE E+ + QET PP
Sbjct: 115 LLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPP- 173
Query: 400 HFPKIKEIISIDGVRVVFEHGFGLIRASNTTPYLVSRFEG 439
GV + + G +++ P +VSR +G
Sbjct: 174 ------------GVDALVKDGEEVVKGQELAPGVVSRLDG 201
>pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 26.9 bits (58), Expect = 4.8
Identities = 28/102 (27%), Positives = 44/102 (42%), Gaps = 14/102 (13%)
Query: 31 LGKIMRECDKSVFVGHDARVHGRFLFEALSAG-LQSSGLKVYDLGLIPTPVAYFAAFNEI 89
+G +M++C V + +GR+ A L+S+G +V + L T Y F I
Sbjct: 33 IGILMQKCRNKVM-----KNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSI 87
Query: 90 NGIQCPNSIMITGSHNPKEYNGFKITLNQNPFYGKDIQALKD 131
NGI P GS + + + K+ FY IQ+ D
Sbjct: 88 NGILFPG-----GSVDLRRSDYAKVA---KIFYNLSIQSFDD 121
>pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|B Chain B, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|C Chain C, Crystal Structure Of Human Squalene Synthase
Length = 340
Score = 26.6 bits (57), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 371 TPEEKIAVSEEEKFEIIHNLQETLKNPPSHFPKIKE 406
T E+ + +S E+K ++HN L P F + KE
Sbjct: 51 TLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKE 86
>pdb|1LNR|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 180
Score = 26.2 bits (56), Expect = 8.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 1 MDISIFREYDIRGIYPTTLDEKGAFSIGVE 30
++I + R D RGI P D +G +++G++
Sbjct: 104 INIGLPRIRDFRGINPNAFDGRGNYNLGIK 133
>pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
Length = 435
Score = 26.2 bits (56), Expect = 8.2
Identities = 13/44 (29%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 374 EKIAVSEEEKFEIIHNLQETLKNPPSHFPKIKEIISIDGVRVVF 417
E + + E+ I N QE ++ P H+PK+ + G RV++
Sbjct: 169 EGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRRKG-RVIY 211
>pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus
Stearothermophilus
pdb|1IQ4|B Chain B, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus
Stearothermophilus
Length = 179
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1 MDISIFREYDIRGIYPTTLDEKGAFSIGVELGKIMRECD 39
+ +S+ R D RG+ + D +G +++G++ I E D
Sbjct: 104 ISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEID 142
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,533
Number of Sequences: 13198
Number of extensions: 119438
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 12
length of query: 459
length of database: 2,899,336
effective HSP length: 91
effective length of query: 368
effective length of database: 1,698,318
effective search space: 624981024
effective search space used: 624981024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)