BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645890|ref|NP_208068.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 0.37
pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cr... 26 0.62
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 26 0.62
pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulator... 25 1.8
pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic ... 24 2.4
pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Pro... 24 2.4
pdb|1CII| Colicin Ia 24 3.1
pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homo... 24 3.1
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilib... 23 5.3
pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate H... 23 5.3
pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of... 23 5.3
pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotran... 23 6.9
pdb|2CRK|A Chain A, Muscle Creatine Kinase 22 9.0
pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Out... 22 9.0
pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical... 22 9.0
pdb|2GSQ| Glutathione S-Transferase From Squid Digestive ... 22 9.0
pdb|1CGW| Cyclomaltodextrin Glucanotransferase (Cgtase) (... 22 9.0
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.9 bits (58), Expect = 0.37
Identities = 13/31 (41%), Positives = 17/31 (53%)
Query: 49 EGYKQAAEGYKKALEAKEKMDKIVNTLKAIN 79
E Y A EGY+ L + D + NT KA+N
Sbjct: 116 EHYVYAKEGYEPVLVIQSSEDYVENTEKALN 146
>pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
pdb|1DIV| Ribosomal Protein L9
pdb|1GIY|K Chain K, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules
Are In The File 1gix
Length = 149
Score = 26.2 bits (56), Expect = 0.62
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 44 AQEEKEGYKQAAEGYKKALEAKEKMDKIVNTLKA 77
AQ++KE +QAAE A + KE+++K+ T+ A
Sbjct: 49 AQKQKE-QRQAAEELANAKKLKEQLEKLTVTIPA 81
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 26.2 bits (56), Expect = 0.62
Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 7/76 (9%)
Query: 8 KNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALE--AK 65
K L EM K+ LE KA++QP QEE E Y+Q E + L+ A+
Sbjct: 35 KETEGLRQEMSKD----LE-EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGAR 89
Query: 66 EKMDKIVNTLKAINHD 81
+K+ ++ L + +
Sbjct: 90 QKLHELQEKLSPLGEE 105
Score = 22.3 bits (46), Expect = 9.0
Identities = 12/51 (23%), Positives = 20/51 (38%)
Query: 15 HEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAK 65
H EH L K ++ + + L + + K + A E Y K L +
Sbjct: 151 HAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ 201
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 24.6 bits (52), Expect = 1.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 69 DKIVNTLKAINHDNNTIDIE 88
DK V +L+AI+H+++ D+E
Sbjct: 105 DKAVESLRAISHEHSPSDLE 124
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 24.3 bits (51), Expect = 2.4
Identities = 8/27 (29%), Positives = 20/27 (73%)
Query: 22 GGLLEASKKAEMQPIFKALWGIAQEEK 48
G +L+ ++ +++ I+K+L ++QEE+
Sbjct: 257 GSVLQTAEDVQVENIYKSLTNLSQEEQ 283
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 24.3 bits (51), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 44 AQEEKEGYKQAAEGYKKALEAKEK 67
+QE++ G KQAAE K ++ + K
Sbjct: 84 SQEDESGIKQAAENIKALIDQEVK 107
>pdb|1CII| Colicin Ia
Length = 602
Score = 23.9 bits (50), Expect = 3.1
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Query: 43 IAQEEKEGYKQAAEGYKK---ALEAKEKMDKIVNTLKAINHD 81
++ ++KE + E K+ A+ A+EK + + TL+A N D
Sbjct: 62 LSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNAD 103
Score = 22.7 bits (47), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 46 EEKEGYKQAAEGY-KKALEAKEKMDKIVNTLKAIN 79
+EKE + G +K E K K D++ T AIN
Sbjct: 398 KEKENIRNQLSGINQKIAEEKRKQDELKATKDAIN 432
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 23.9 bits (50), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 38 KALWGIAQEEKEGYKQAAEGYKKALEAKE 66
+ +WG+ KE Q A G ALEA E
Sbjct: 86 RQVWGLNFGSKEDAAQFAAGMASALEALE 114
>pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1EBH|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|1EBH|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|1EBG|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
pdb|1EBG|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
Length = 436
Score = 23.1 bits (48), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 64 AKEKMDKIVNTLKAINHD 81
A+E +D IV+ +KA HD
Sbjct: 221 AEEALDLIVDAIKAAGHD 238
>pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Holo)
pdb|5ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Calcium
pdb|6ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Phosphoglycolic Acid And Zinc
pdb|7ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Magnesium
pdb|3ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Apo)
pdb|1ELS| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complexed
With Phosphonoacetohydroxamate And Manganese
pdb|1NEL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Orthophosphate, Fluoride And Magnesium
Length = 436
Score = 23.1 bits (48), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 64 AKEKMDKIVNTLKAINHD 81
A+E +D IV+ +KA HD
Sbjct: 221 AEEALDLIVDAIKAAGHD 238
>pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 23.1 bits (48), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 64 AKEKMDKIVNTLKAINHD 81
A+E +D IV+ +KA HD
Sbjct: 221 AEEALDLIVDAIKAAGHD 238
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 22.7 bits (47), Expect = 6.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 49 EGYKQA--AEGYKKALEAKEKMDKIVNTLKAI 78
EGY + A Y+K EA E+M++++ K +
Sbjct: 357 EGYVRISYATAYEKLEEAMERMERVLKERKLV 388
>pdb|2CRK|A Chain A, Muscle Creatine Kinase
Length = 381
Score = 22.3 bits (46), Expect = 9.0
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 7 NKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGY 58
N N S L +++H ++ K M+ +F+ Q+ +E +K+A +
Sbjct: 220 NDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPF 271
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein
Light Chain 1
Length = 198
Score = 22.3 bits (46), Expect = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 66 EKMDKIVNTLKAINH 80
EKMD ++TLKA H
Sbjct: 38 EKMDATLSTLKACKH 52
>pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical Protein, Yl85
pdb|1F89|B Chain B, Crystal Structure Of Yeast Hypothetical Protein, Yl85
Length = 291
Score = 22.3 bits (46), Expect = 9.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 63 EAKEKMDKIVNTLKAINHDNNTID 86
E K DKI NT N D ID
Sbjct: 101 ELDPKTDKIYNTSIIFNEDGKLID 124
>pdb|2GSQ| Glutathione S-Transferase From Squid Digestive Gland Complexed
With S-(3-Iodobenzyl)glutathione
pdb|1GSQ| Glutathione S-Transferase (Gst) (E.C.2.5.1.18) Complexed With
1-(S-Glutathionyl)-2,4-Dinitrobenzene
Length = 202
Score = 22.3 bits (46), Expect = 9.0
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Query: 59 KKALEAKEKMDKIVNTLKAINHDNNTIDIEPEDEKD 94
K +LE K ++D+I TL+ I +D I PE K+
Sbjct: 79 KTSLE-KYRVDEITETLQDIFNDVVKIKFAPEAAKE 113
>pdb|1CGW| Cyclomaltodextrin Glucanotransferase (Cgtase) (E.C.2.4.1.19)
Mutant With Tyr 195 Replaced By Gly (Y195g)
Length = 686
Score = 22.3 bits (46), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 70 KIVNTLKAINHDNNTIDIEPED 91
K + L +NH+N+T+D+ +D
Sbjct: 192 KNLGDLADLNHNNSTVDVYLKD 213
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.304 0.125 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,136
Number of Sequences: 13198
Number of extensions: 18946
Number of successful extensions: 41
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 20
length of query: 94
length of database: 2,899,336
effective HSP length: 70
effective length of query: 24
effective length of database: 1,975,476
effective search space: 47411424
effective search space used: 47411424
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 46 (22.3 bits)