BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645891|ref|NP_208069.1| tryptophan synthase, alpha
subunit (trpA) [Helicobacter pylori 26695]
(262 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K3U|A Chain A, Crystal Structure Of Wild-Type Tryptoph... 233 2e-62
pdb|2TSY|A Chain A, Crystal Structures Of Mutant (Betak87t)... 233 2e-62
pdb|1QOP|A Chain A, Crystal Structure Of Wild-Type Tryptoph... 233 2e-62
pdb|1A5A|A Chain A, Cryo-Crystallography Of A True Substrat... 231 6e-62
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptopha... 155 4e-39
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 31 0.13
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 31 0.17
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 30 0.22
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 30 0.22
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 30 0.22
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 30 0.22
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 30 0.22
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 30 0.22
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 30 0.22
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 30 0.22
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 30 0.22
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 30 0.22
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 30 0.22
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 30 0.22
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 30 0.22
pdb|1EHC| Structure Of Signal Transduction Protein Chey 30 0.22
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 30 0.22
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 30 0.22
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 30 0.22
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 30 0.28
pdb|5CHY| Structure Of Chemotaxis Protein Chey 30 0.37
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 0.48
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosin... 27 3.1
pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosph... 27 3.1
pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A ... 27 3.1
pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus ... 26 4.1
pdb|1I74|A Chain A, Streptococcus Mutans Inorganic Pyrophos... 26 4.1
pdb|1E6B|A Chain A, Crystal Structure Of A Zeta Class Gluta... 26 5.3
pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT 25 7.0
pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant, ... 25 7.0
pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated... 25 7.0
pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized F... 25 7.0
pdb|1GSN| Human Glutathione Reductase Modified By Dinitro... 25 7.0
pdb|1DNC| Human Glutathione Reductase Modified By Digluta... 25 7.0
pdb|1XAN| Human Glutathione Reductase In Complex With A X... 25 7.0
pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine De... 25 9.1
>pdb|1K3U|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7X|A Chain A, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|A Chain A, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|A Chain A, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7E|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1CW2|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylsulfinyl)-Butylphosphonic Acid
pdb|1C8V|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-Butylphosphonic Acid
pdb|1C29|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-1-Butenylphosphonic Acid
pdb|1C9D|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxy-4-Fluorophenylthio)-Butylphosphonic Acid
pdb|1CX9|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Aminophenylthio)-Butylphosphonic Acid
pdb|2TRS|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|1FUY|A Chain A, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
Tryptophan Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
pdb|1A50|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate
pdb|1A5S|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1UBS|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87 ->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|1TTQ|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1TTP|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|2TYS|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|1BKS|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1QOQ|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
pdb|2WSY|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Length = 268
Score = 233 bits (594), Expect = 2e-62
Identities = 126/260 (48%), Positives = 171/260 (65%), Gaps = 1/260 (0%)
Query: 2 RYQNMFETLKKHEKMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGLAFSDPVADGI 61
RY+N+F L + AF+PFVTLGDP E S +II TLI +G ALELG+ FSDP+ADG
Sbjct: 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGP 62
Query: 62 TIQASHLRALKHA-SMAKNFQLLKKIRDYNHNIPIGLLAYANLIFSYGVDGFYAQAKECG 120
TIQ ++LRA + A+ F++L IR+ + IPIGLL YANL+F+ G+D FYA+ ++ G
Sbjct: 63 TIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVG 122
Query: 121 IDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYIYALARSGV 180
+DSVL+AD+P+ E ++A +H I IFI PNA L QVA++ +GY Y L+RSGV
Sbjct: 123 VDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGV 182
Query: 181 TGASRILENDSSAIIKTLKAFSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIE 240
TGA +I+ LK + PAL GFGIS E ++ A GA G I GSA+VKIIE
Sbjct: 183 TGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242
Query: 241 ENLNNENAMLEKIKGFIGGM 260
+NL + ML +++ F+ M
Sbjct: 243 KNLASPKQMLAELRSFVSAM 262
>pdb|2TSY|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 262
Score = 233 bits (594), Expect = 2e-62
Identities = 126/260 (48%), Positives = 173/260 (66%), Gaps = 7/260 (2%)
Query: 2 RYQNMFETLKKHEKMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGLAFSDPVADGI 61
RY+N+F L + AF+PFVTLGDP E S +II TLI +G ALELG+ FSDP+ADG
Sbjct: 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGP 62
Query: 62 TIQASHLRALKHA-SMAKNFQLLKKIRDYNHNIPIGLLAYANLIFSYGVDGFYAQAKECG 120
TIQ ++LRA + A+ F++L IR+ + IPIGLL YANL+F+ G+D FYA+ ++ G
Sbjct: 63 TIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVG 122
Query: 121 IDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYIYALARSGV 180
+DSVL+AD+P+ E ++A +H I IFI PNA L QVA++ +GY Y L+RSGV
Sbjct: 123 VDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGV 182
Query: 181 TGASRILENDSSAIIKTLKAFSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIE 240
TGA ++ +I+ LK + PAL GFGIS E ++ A GA G I GSA+VKIIE
Sbjct: 183 TGA------ENHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 236
Query: 241 ENLNNENAMLEKIKGFIGGM 260
+NL + ML +++ F+ M
Sbjct: 237 KNLASPKQMLAELRSFVSAM 256
>pdb|1QOP|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
Length = 268
Score = 233 bits (593), Expect = 2e-62
Identities = 126/260 (48%), Positives = 171/260 (65%), Gaps = 1/260 (0%)
Query: 2 RYQNMFETLKKHEKMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGLAFSDPVADGI 61
RY+N+F L + AF+PFVTLGDP E S +II TLI +G ALELG+ FSDP+ADG
Sbjct: 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGP 62
Query: 62 TIQASHLRALKHA-SMAKNFQLLKKIRDYNHNIPIGLLAYANLIFSYGVDGFYAQAKECG 120
TIQ ++LRA + A+ F++L IR+ + IPIGLL YANL+F+ G+D FYA+ ++ G
Sbjct: 63 TIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVG 122
Query: 121 IDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYIYALARSGV 180
+DSVL+AD+P+ E ++A +H I IFI PNA L QVA++ +GY Y L+RSGV
Sbjct: 123 VDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGV 182
Query: 181 TGASRILENDSSAIIKTLKAFSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIE 240
TGA +I+ LK + PAL GFGIS E ++ A GA G I GSA+VKIIE
Sbjct: 183 TGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242
Query: 241 ENLNNENAMLEKIKGFIGGM 260
+NL + ML +++ F+ M
Sbjct: 243 KNLASPKQMLAELRSFVSAM 262
>pdb|1A5A|A Chain A, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1BEU|A Chain A, Trp Synthase (D60n-Ipp-Ser) With K+
pdb|1A5B|A Chain A, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
Length = 268
Score = 231 bits (589), Expect = 6e-62
Identities = 125/260 (48%), Positives = 171/260 (65%), Gaps = 1/260 (0%)
Query: 2 RYQNMFETLKKHEKMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGLAFSDPVADGI 61
RY+N+F L + AF+PFVTLGDP E S +II TLI +G ALELG+ FSDP+A+G
Sbjct: 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLANGP 62
Query: 62 TIQASHLRALKHA-SMAKNFQLLKKIRDYNHNIPIGLLAYANLIFSYGVDGFYAQAKECG 120
TIQ ++LRA + A+ F++L IR+ + IPIGLL YANL+F+ G+D FYA+ ++ G
Sbjct: 63 TIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVG 122
Query: 121 IDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYIYALARSGV 180
+DSVL+AD+P+ E ++A +H I IFI PNA L QVA++ +GY Y L+RSGV
Sbjct: 123 VDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGV 182
Query: 181 TGASRILENDSSAIIKTLKAFSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIE 240
TGA +I+ LK + PAL GFGIS E ++ A GA G I GSA+VKIIE
Sbjct: 183 TGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242
Query: 241 ENLNNENAMLEKIKGFIGGM 260
+NL + ML +++ F+ M
Sbjct: 243 KNLASPKQMLAELRSFVSAM 262
>pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
Length = 248
Score = 155 bits (392), Expect = 4e-39
Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 3/237 (1%)
Query: 17 AFIPFVTLGDPNYELSFEIIKTLIISGVSALELGLAFSDPVADGITIQASHLRALKHA-S 75
+ IP++T GDP+ + + + L A+ELG+ FSDP+ADG TIQ SH RALK+
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALD-EYAGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 76 MAKNFQLLKKIRDYNHNIPIGLLAYANLIFSYGVDGFYAQAKECGIDSVLIADMPLIEKE 135
+ + F ++K+ R ++ + PI L+ Y N I+ GV F A+AK G+D +L+ D+P+ +
Sbjct: 65 LREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAK 123
Query: 136 LVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYIYALARSGVTGASRILENDSSAII 195
+ A++ IK +F+A+PN + L+ + + G++Y ++ G TGA + + ++
Sbjct: 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLL 183
Query: 196 KTLKAFSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNENAMLEK 252
+ K +GFG+SK+EH+ + GA+GV+ GSALVKII E L+K
Sbjct: 184 RRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKK 240
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 31.2 bits (69), Expect = 0.13
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 30.8 bits (68), Expect = 0.17
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 117
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLN 120
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 122
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 122
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 117
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 119
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 30.4 bits (67), Expect = 0.22
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 30.0 bits (66), Expect = 0.28
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE++ A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLN 120
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 29.6 bits (65), Expect = 0.37
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 190 DSSAIIKTLKA---FSPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLN 244
D ++KT++A S P L+ +KKE+I A GA G + +EE LN
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLN 120
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 29.3 bits (64), Expect = 0.48
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 113 YAQAKECGIDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYI 172
Y ++KE D++L D L EKE I +++++ S AS+K L ++ ++ +
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEI------EVERVKAESAQASAKMLHEMQRKNEQMM 517
Query: 173 YALARSGVTGASRILENDSSAIIKTLKAFSPTPAL 207
RS ++ E + ++ LK T AL
Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
Length = 514
Score = 26.6 bits (57), Expect = 3.1
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 3/54 (5%)
Query: 205 PALLGFGISKKEHITNAKGMGADGVICGSALVKIIE---ENLNNENAMLEKIKG 255
P + GI HI A +GA V+ GS L E E ++ L+K +G
Sbjct: 360 PVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRG 413
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 26.6 bits (57), Expect = 3.1
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 3/54 (5%)
Query: 205 PALLGFGISKKEHITNAKGMGADGVICGSALVKIIE---ENLNNENAMLEKIKG 255
P + GI HI A +GA V+ GS L E E ++ L+K +G
Sbjct: 360 PVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRG 413
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
Length = 444
Score = 26.6 bits (57), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 89 YNHNIPIGLLAYANLIFSYGVDGFYAQA 116
YN +P GLL Y L+ G D F ++
Sbjct: 303 YNRTLPPGLLPYLRLVALGGTDAFLLES 330
>pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|B Chain B, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|C Chain C, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|D Chain D, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|E Chain E, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|F Chain F, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
Length = 337
Score = 26.2 bits (56), Expect = 4.1
Identities = 32/104 (30%), Positives = 44/104 (41%), Gaps = 11/104 (10%)
Query: 134 KELVIKSAQKHQIKQIFIASPNASSKD--LEQVATHSQGYIYALARSGVTGASRILENDS 191
KE+ + S QIKQ + SSK+ + V QG + V AS++LE S
Sbjct: 210 KEVAVSSHXVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQ-VEVASKLLEGLS 268
Query: 192 SAIIKTLKAFSPTPALLGFGISKKEHITNAKGMGADGVICGSAL 235
+ I TP L + ++ AK GA G CG AL
Sbjct: 269 TDIY--------TPLLRQLKEASQDLQAVAKSSGAGGGDCGIAL 304
>pdb|1I74|A Chain A, Streptococcus Mutans Inorganic Pyrophosphatase
pdb|1I74|B Chain B, Streptococcus Mutans Inorganic Pyrophosphatase
Length = 309
Score = 26.2 bits (56), Expect = 4.1
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 99 AYANLIFSYGVDGFYAQAKECGIDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASS 158
AYA L GVD ++ + D I+ V+KSAQ KQ+ + N
Sbjct: 21 AYAYLKRQLGVDAQAVALGNPNEETAFVLDYFGIQAPPVVKSAQAEGAKQVILTDHNEFQ 80
Query: 159 KDLEQV 164
+ + +
Sbjct: 81 QSIADI 86
>pdb|1E6B|A Chain A, Crystal Structure Of A Zeta Class Glutathione
S-Transferase From Arabidopsis Thaliana
Length = 221
Score = 25.8 bits (55), Expect = 5.3
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
Query: 186 ILENDSSAIIKTLKAFSPTPALLGFGISKKEHITNAKGMGADGV--ICGSALVKIIEENL 243
++ NDS AII L P P LL + K+ A + G+ A+++ IEE +
Sbjct: 68 VVINDSFAIIMYLDEKYPEPPLLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKI 127
Query: 244 NNE 246
N E
Sbjct: 128 NVE 130
>pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 338
>pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
pdb|3GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|2GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|4GRT| Human Glutathione Reductase A34e, R37w Mutant, Mixed Disulfide
Between Trypanothione And The Enzyme
Length = 461
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 286 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 321
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 288 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 323
>pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized Form (E)
pdb|1GRB| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With Nadh
And Phosphate
pdb|1GRA| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With
Glutathione Disulfide And Nadp+
pdb|1GRE| Glutathione Reductase (E.C.1.6.4.2) Complex With Covalently Bound
Glutathione And Phosphate
pdb|1GRF| Glutathione Reductase (E.C.1.6.4.2) Carboxymethylated At Cys 58
Complex With Phosphate
pdb|1GRG| Glutathione Reductase (E.C.1.6.4.2) Modified By Bcnu
(1,3-Bis(2-Chloroethyl)-1-Nitrosourea) At Cys 58
Complexed With Phosphate
pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|4GR1| Glutathione Reductase (E.C.1.6.4.2) Oxidized Form Complexed With
Retro-Gssg
pdb|1GRH| Glutathione Reductase (E.C.1.6.4.2) Modified By Hecnu
(1-(2-Chloroethyl)-3-(2-Hydroxyethyl)-1-Nitrosourea) At
Cys 58 Complexed With Phosphate
Length = 478
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 338
>pdb|1GSN| Human Glutathione Reductase Modified By Dinitrosoglutathione
Length = 478
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 338
>pdb|1DNC| Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 338
>pdb|1XAN| Human Glutathione Reductase In Complex With A Xanthene Inhibitor
Length = 461
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 208 LGFGISKKEHI-------TNAKGMGADGVICGSALV 236
LG K HI TN KG+ A G +CG AL+
Sbjct: 286 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 321
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 25.0 bits (53), Expect = 9.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 160 DLEQVATHSQGYIYALARSGVTGASRILENDSSAIIKTLKAFSPTPALLGFGISKKEHIT 219
DL + ++ AL R VT + NDS AI+KTL A GF + K I
Sbjct: 38 DLGDILKKHLRWLKALPR--VTPFYAVXCNDSKAIVKTLAATG-----TGFDCASKTEIQ 90
Query: 220 NAKGMG 225
+ +G
Sbjct: 91 LVQSLG 96
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,398,640
Number of Sequences: 13198
Number of extensions: 53155
Number of successful extensions: 146
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 41
length of query: 262
length of database: 2,899,336
effective HSP length: 86
effective length of query: 176
effective length of database: 1,764,308
effective search space: 310518208
effective search space used: 310518208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)