BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645892|ref|NP_208070.1| tryptophan synthase, beta
subunit (trpB) [Helicobacter pylori 26695]
(393 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 519 e-148
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From... 518 e-148
pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 518 e-148
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+ >gi... 518 e-148
pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro... 518 e-148
pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 516 e-147
pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W... 516 e-147
pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With... 516 e-147
pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t)... 516 e-147
pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase ... 54 4e-08
pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of... 34 0.025
pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmo... 34 0.025
pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deami... 33 0.043
pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topois... 27 4.0
pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoi... 27 4.0
pdb|1K9E|A Chain A, Crystal Structure Of A Mutated Family-6... 27 5.2
pdb|1CLM| Calmodulin (Paramecium Tetraurelia) (Wild Type) 27 5.2
pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-... 27 5.2
pdb|1OSA| Calmodulin >gi|10835683|pdb|1EXR|A Chain A, The... 27 5.2
pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransfera... 26 6.8
pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 26 8.9
pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 26 8.9
>pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1QOP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
Length = 396
Score = 519 bits (1336), Expect = e-148
Identities = 255/385 (66%), Positives = 315/385 (81%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF + KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 7 YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 66
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 67 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW+ SY+ HY+
Sbjct: 127 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYM 186
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 187 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 246
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 306
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 307 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 366
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 367 KEQLLVVNLSGRGDKDIFTVHDILK 391
>pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylsulfinyl)-Butylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-Butylphosphonic Acid
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-1-Butenylphosphonic Acid
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxy-4-Fluorophenylthio)-Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Aminophenylthio)-Butylphosphonic Acid
Length = 397
Score = 518 bits (1334), Expect = e-148
Identities = 255/385 (66%), Positives = 314/385 (81%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 8 YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 67
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 68 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW+ SY+ HY+
Sbjct: 128 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYM 187
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 188 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 247
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 248 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 307
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 308 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 367
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 368 KEQLLVVNLSGRGDKDIFTVHDILK 392
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Length = 396
Score = 518 bits (1334), Expect = e-148
Identities = 255/385 (66%), Positives = 314/385 (81%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 7 YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 66
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 67 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW+ SY+ HY+
Sbjct: 127 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYM 186
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 187 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 246
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 306
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 307 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 366
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 367 KEQLLVVNLSGRGDKDIFTVHDILK 391
>pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
Length = 397
Score = 518 bits (1334), Expect = e-148
Identities = 255/385 (66%), Positives = 314/385 (81%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 8 YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 67
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 68 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW+ SY+ HY+
Sbjct: 128 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYM 187
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 188 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 247
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 248 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 307
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 308 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 367
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 368 KEQLLVVNLSGRGDKDIFTVHDILK 392
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 518 bits (1334), Expect = e-148
Identities = 255/385 (66%), Positives = 314/385 (81%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF + KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 7 YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 66
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 67 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW SY+ HY+
Sbjct: 127 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWPGSYETAHYM 186
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 187 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 246
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 306
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 307 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 366
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 367 KEQLLVVNLSGRGDKDIFTVHDILK 391
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 516 bits (1330), Expect = e-147
Identities = 254/385 (65%), Positives = 314/385 (80%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF + KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 7 YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 66
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 67 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEAL DW+ SY+ HY+
Sbjct: 127 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALADWSGSYETAHYM 186
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 187 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 246
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 306
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 307 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 366
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 367 KEQLLVVNLSGRGDKDIFTVHDILK 391
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
Tryptophan Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 516 bits (1329), Expect = e-147
Identities = 254/385 (65%), Positives = 314/385 (80%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF + KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 7 YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 66
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAHKTNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 67 GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKD NEALRDW+ SY+ HY+
Sbjct: 127 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDLWNEALRDWSGSYETAHYM 186
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 187 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 246
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 306
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 307 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 366
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 367 KEQLLVVNLSGRGDKDIFTVHDILK 391
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87 ->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 516 bits (1328), Expect = e-147
Identities = 254/385 (65%), Positives = 313/385 (80%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 8 YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 67
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAH TNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 68 GTRTTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW+ SY+ HY+
Sbjct: 128 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYM 187
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 188 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 247
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 248 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 307
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 308 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 367
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 368 KEQLLVVNLSGRGDKDIFTVHDILK 392
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 516 bits (1328), Expect = e-147
Identities = 254/385 (65%), Positives = 313/385 (80%), Gaps = 1/385 (0%)
Query: 6 YFGEFGGSFVSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVS 65
YFGEFGG +V ++L+PAL +LE+AF KD +FQ ++ LLK++ GRP+ LT CQNI +
Sbjct: 8 YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITA 67
Query: 66 NPKVKLYLKREDLIHGGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLN 125
+ LYLKREDL+HGGAH TNQ LGQALLAK+MGK+ IIAETGAGQHGVA+A+A ALL
Sbjct: 68 GTRTTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 126 LKCVVFMGSKDIKRQEMNVFRMHLLGAEVREVNSGSATLKDAVNEALRDWASSYKDTHYL 185
LKC ++MG+KD++RQ NVFRM L+GAEV V+SGSATLKDA NEALRDW+ SY+ HY+
Sbjct: 128 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYM 187
Query: 186 LGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLND 245
LGTAAGPHPYPT+V+ FQ+MIG+E K+QIL+KE RLPD VIACVGGGSNAIG+F+ F+ND
Sbjct: 188 LGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND 247
Query: 246 KEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYP 305
V LIGVEP G G+ET +HGA L GRVGI G K ++Q +GQI ES+SISAGLD+P
Sbjct: 248 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFP 307
Query: 306 GVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALK-LAQKCE 364
VGP+H+YL GRA Y S +D EALEAFK LC+ EGIIPALESSHALA+ALK + ++ E
Sbjct: 308 SVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPE 367
Query: 365 EESIIVVNLSGRGDKDLSTVYNALK 389
+E ++VVNLSGRGDKD+ TV++ LK
Sbjct: 368 KEQLLVVNLSGRGDKDIFTVHDILK 392
>pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|B Chain B, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|C Chain C, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|D Chain D, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
Length = 303
Score = 53.5 bits (127), Expect = 4e-08
Identities = 87/351 (24%), Positives = 145/351 (40%), Gaps = 58/351 (16%)
Query: 37 EKFQKEYFRLLKDFVGRPSPLTLCQNIVSNPKVKLYLKREDLIHGGAHKTNQALGQALLA 96
+K + +++ +G +P+ +I S +++LK E GG+ K AL L A
Sbjct: 4 DKIHHHHHHMMERLIGS-TPIVRLDSIDS----RIFLKLEKNNPGGSVKDRPALFMILDA 58
Query: 97 KKMGKTRI-IAETGAGQHGVATAIACALLNLKCVVFM-GSKDIKRQEMNVFRMHLLGAEV 154
+K G + I E +G G+A A+ A + ++ M + ++R+++ + +LGAE+
Sbjct: 59 EKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKV----LKMLGAEL 114
Query: 155 REVNSGSATLKDAVNEALRDWASSYKDTHYLLGTAAGPHPYPTMVKTFQKMIGDEVKSQI 214
+ G +K AV +AL S H L P V + Q G E I
Sbjct: 115 -VLTPGELGMKGAVEKALE--ISRETGAHML-----NQFENPYNVYSHQFTTGPE----I 162
Query: 215 LEKENRLPDYVIACVGGGSNAIG---IFSAFLNDKEVKLIGVEPAGLGLETNKHGATLNK 271
L++ + D +A VG G G + F + VK++ VEPA L+
Sbjct: 163 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGN-GVKIVAVEPA--------KSPVLSG 213
Query: 272 GRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEAL 331
G+ G H+I G G L S + D EA
Sbjct: 214 GQPG-------------------KHAIQG----IGAGFVPKILDRSVIDEVITVEDEEAY 250
Query: 332 EAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLS 382
E + L +KEG++ + S +A ALK+AQK ++ +V ++ LS
Sbjct: 251 EMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 301
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 34.3 bits (77), Expect = 0.025
Identities = 24/62 (38%), Positives = 36/62 (57%), Gaps = 7/62 (11%)
Query: 326 SDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESI----IVVNLSGRGDKDL 381
++ EA+ + L ++EGI+ + S A+A ALKL E+ES IVV L G++ L
Sbjct: 250 TNEEAISTARRLMEEEGILAGISSGAAVAAALKLQ---EDESFTNKNIVVILPSSGERYL 306
Query: 382 ST 383
ST
Sbjct: 307 ST 308
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 34.3 bits (77), Expect = 0.025
Identities = 24/62 (38%), Positives = 36/62 (57%), Gaps = 7/62 (11%)
Query: 326 SDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESI----IVVNLSGRGDKDL 381
++ EA+ + L ++EGI+ + S A+A ALKL E+ES IVV L G++ L
Sbjct: 250 TNEEAISTARRLMEEEGILAGISSGAAVAAALKLQ---EDESFTNKNIVVILPSSGERYL 306
Query: 382 ST 383
ST
Sbjct: 307 ST 308
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 33.5 bits (75), Expect = 0.043
Identities = 74/351 (21%), Positives = 121/351 (34%), Gaps = 103/351 (29%)
Query: 54 PSPLT----LCQNIVSNPKVKLYLKRED-----------------------------LIH 80
PSP++ L Q++ S KV +Y KRED L+
Sbjct: 15 PSPISNLNRLSQHLGS--KVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVS 72
Query: 81 GGAHKTNQALGQALLAKKMGKTRIIAETGAGQHGVATAIACALLNLKCV-VFMGSKDIKR 139
G ++NQ A LA K+GK C L+ V + KD+
Sbjct: 73 IGGRQSNQTRMVAALAAKLGK------------------KCVLIQEDWVPIPEAEKDVYN 114
Query: 140 QEMNVFRMHLLGAEVREVNSG-SATLKDAVNEALRDWASSYKDTHYLLGTAAGPHPYPTM 198
+ N+ ++GA+VR + G ++ + AL++ AG PYP
Sbjct: 115 RVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELED------------AGHKPYPIP 162
Query: 199 VKTFQKMIG--------DEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLN-DKEVK 249
+ G DEV +Q +E + V+ CV G + A GI + ++
Sbjct: 163 AGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTA-GILAGMAQYGRQDD 221
Query: 250 LIGVEPAGLGLETNKHGATLNKGR---VGILHGNKTYLLQ----------DDEGQI---- 292
+I ++ + +T + + +G+ H K + L +EG I
Sbjct: 222 VIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIR 281
Query: 293 --AESHSISAGLDYPGVGPE-------HSYLKESGRAVYESASDAEALEAF 334
AE + Y G + Y K +Y A AL A+
Sbjct: 282 TCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGAPALSAY 332
>pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii
Length = 653
Score = 26.9 bits (58), Expect = 4.0
Identities = 28/108 (25%), Positives = 48/108 (43%), Gaps = 12/108 (11%)
Query: 194 PYPTMVKTFQKMIGDEV---KSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKL 250
P P + K GDE+ K +++E++ + P + +A+ + F+ DK++K
Sbjct: 463 PLPVVAK------GDELLCEKGEVVERQTQPPRHFTDATL--LSAMTGIARFVQDKDLKK 514
Query: 251 IGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSI 298
I GLG E + G + G L Y+ D G+ A HS+
Sbjct: 515 ILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGK-ALFHSL 561
>pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With
An 8-Base Single-Stranded Dna Oligonucleotide
Length = 659
Score = 26.9 bits (58), Expect = 4.0
Identities = 28/108 (25%), Positives = 48/108 (43%), Gaps = 12/108 (11%)
Query: 194 PYPTMVKTFQKMIGDEV---KSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKL 250
P P + K GDE+ K +++E++ + P + +A+ + F+ DK++K
Sbjct: 463 PLPVVAK------GDELLCEKGEVVERQTQPPRHFTDATL--LSAMTGIARFVQDKDLKK 514
Query: 251 IGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSI 298
I GLG E + G + G L Y+ D G+ A HS+
Sbjct: 515 ILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGK-ALFHSL 561
>pdb|1K9E|A Chain A, Crystal Structure Of A Mutated Family-67 Alpha-D-
Glucuronidase (E285n) From Bacillus Stearothermophilus
T-6, Complexed With 4-O-Methyl-Glucuronic Acid
pdb|1K9F|A Chain A, Crystal Structure Of A Mutated Family-67 Alpha-D-
Glucuronidase (E285n) From Bacillus Stearothermophilus
T-6, Complexed With Aldotetraouronic Acid
Length = 679
Score = 26.6 bits (57), Expect = 5.2
Identities = 14/42 (33%), Positives = 21/42 (49%)
Query: 210 VKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLI 251
V Q +++ R+ DY G NAI I + ++ E KLI
Sbjct: 169 VDDQFVKQNQRIKDYARLLASVGINAISINNVNVHKTETKLI 210
>pdb|1CLM| Calmodulin (Paramecium Tetraurelia) (Wild Type)
Length = 148
Score = 26.6 bits (57), Expect = 5.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 302 LDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQK-EGIIPALESSHALA-YALKL 359
+D+P +L R + E S+ E +EAFK+ + G+I A E H + KL
Sbjct: 63 IDFP------EFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 116
Query: 360 AQKCEEESIIVVNLSGRG 377
+E I ++ G G
Sbjct: 117 TDDEVDEMIREADIDGDG 134
>pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-Glucuronidase, A
Family-67 Glycoside Hydrolase From Bacillus
Stearothermophilus T-1
Length = 679
Score = 26.6 bits (57), Expect = 5.2
Identities = 14/42 (33%), Positives = 21/42 (49%)
Query: 210 VKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLI 251
V Q +++ R+ DY G NAI I + ++ E KLI
Sbjct: 169 VDDQFVKQNQRIKDYARLLASVGINAISINNVNVHKTETKLI 210
>pdb|1OSA| Calmodulin
pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
Length = 148
Score = 26.6 bits (57), Expect = 5.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 302 LDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQK-EGIIPALESSHALA-YALKL 359
+D+P +L R + E S+ E +EAFK+ + G+I A E H + KL
Sbjct: 63 IDFP------EFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 116
Query: 360 AQKCEEESIIVVNLSGRG 377
+E I ++ G G
Sbjct: 117 TDDEVDEMIREADIDGDG 134
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
pdb|1QAP|B Chain B, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
Length = 296
Score = 26.2 bits (56), Expect = 6.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 211 KSQILEKENRLPD------YVIACVGGGSNAIGIFSAFL 243
++Q+L+ LP Y + C GG ++ +G+ AFL
Sbjct: 145 QTQLLDTRKTLPGLRTALKYAVLCGGGANHRLGLTDAFL 183
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/69 (24%), Positives = 30/69 (42%), Gaps = 6/69 (8%)
Query: 82 GAHKTNQA--LGQALLAKKMGKTRIIAETGAGQHGVATAIACALLNLKCVVFMGSKDIKR 139
G K N A L A+ + + ++I+ E + CA+L + +G D R
Sbjct: 180 GVKKVNSADELDYAIESARQYDSKILIEQAVS----GCEVGCAVLGNSAALVVGEVDQIR 235
Query: 140 QEMNVFRMH 148
+ +FR+H
Sbjct: 236 LQYGIFRIH 244
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/69 (24%), Positives = 30/69 (42%), Gaps = 6/69 (8%)
Query: 82 GAHKTNQA--LGQALLAKKMGKTRIIAETGAGQHGVATAIACALLNLKCVVFMGSKDIKR 139
G K N A L A+ + + ++I+ E + CA+L + +G D R
Sbjct: 180 GVKKVNSADELDYAIESARQYDSKILIEQAVS----GCEVGCAVLGNSAALVVGEVDQIR 235
Query: 140 QEMNVFRMH 148
+ +FR+H
Sbjct: 236 LQYGIFRIH 244
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,313,982
Number of Sequences: 13198
Number of extensions: 97515
Number of successful extensions: 275
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 23
length of query: 393
length of database: 2,899,336
effective HSP length: 90
effective length of query: 303
effective length of database: 1,711,516
effective search space: 518589348
effective search space used: 518589348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)