BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645893|ref|NP_208071.1| anthranilate isomerase
(trpC) [Helicobacter pylori 26695]
(452 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PII| N-(5'phosphoribosyl)anthranilate Isomerase (E.C... 355 6e-99
pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Eng... 241 1e-64
pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Pho... 139 9e-34
pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-Glycerol ... 136 4e-33
pdb|1IGS| Indole-3-Glycerolphosphate Synthase From Sulfol... 127 3e-30
pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol ... 125 1e-29
pdb|1DL3|B Chain B, Crystal Structure Of Mutually Generated... 106 5e-24
pdb|1NSJ| Crystal Structure Of Phosphoribosyl Anthranilat... 99 1e-21
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex >g... 29 0.95
pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 29 1.2
pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fuse... 28 2.8
pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain 27 3.6
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 27 3.6
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd (Dic... 27 4.7
pdb|1MAB|G Chain G, Rat Liver F1-Atpase 27 4.7
>pdb|1PII| N-(5'phosphoribosyl)anthranilate Isomerase (E.C.5.3.1.24) Complex
With Indole-3-Glycerol-Phosphate Synthase (E.C.4.1.1.48)
Length = 452
Score = 355 bits (911), Expect = 6e-99
Identities = 212/457 (46%), Positives = 280/457 (60%), Gaps = 10/457 (2%)
Query: 1 MPSVLENILKDKLLEVSDLKKNHALPI---NINPSDRDFKKALLEKKTSFILECKKASPS 57
M +VL I+ DK + V K+ L + PS R F AL +T+FILECKKASPS
Sbjct: 1 MQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGARTAFILECKKASPS 60
Query: 58 KGLIRKDFDLLKITKTYEKFASCISVLADSKYFLGSYENIKIVSQHSTKPILCKDFIIDA 117
KG+IR DFD +I Y+ +AS ISVL D KYF GS+ + IVSQ + +PILCKDFIID
Sbjct: 61 KGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDP 120
Query: 118 FQIKLARMMGANAVLLMLSVLDDKNYLELFNLAKSLNMSVLTEVSNQQEIEHLLKLQYDI 177
+QI LAR A+A LLMLSVLDD Y +L +A SL M VLTEVSN++E E + L +
Sbjct: 121 YQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKV 180
Query: 178 IGINNRDLHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQIKALAPYVNGFLVGSSLM 237
+GINNRDL L D+N T +L P L + +ISESGI ++AQ++ L+ + NGFL+GS+LM
Sbjct: 181 VGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALM 240
Query: 238 KEKDLKKACIKLILGENKVCGLTRIKDAKAVYKNHFIYGGLIFEKSSPRYIKPKEALKIT 297
DL A +++LGENKVCGLTR +DAKA Y IYGGLIF +SPR + ++A ++
Sbjct: 241 AHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEV- 299
Query: 298 KAVKKLDFVGVFVKDSIKKIQKIVKKLDLKAVQLYG-YSQKEIAQLKKALPKTCAIWQVI 356
A L +VGVF I + K L L AVQL+G Q I L++ALP AIW+ +
Sbjct: 300 MAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKAL 359
Query: 357 SVMSAKDLVPKTKEASLILYDTKGDKMGGNGVSFDWEILENVKT-PFMLAGGLNLDNIQK 415
SV + +P + + Y + GG+G FDW +L +LAGGL DN +
Sbjct: 360 SV---GETLPAREFQHVDKY-VLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVE 415
Query: 416 ALKVEALGLDFNSGLEISPGIKNKDKIKRLARILREY 452
A + GLDFNS +E PGIK+ + + + LR Y
Sbjct: 416 AAQTGCAGLDFNSAVESQPGIKDARLLASVFQTLRAY 452
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 241 bits (615), Expect = 1e-64
Identities = 134/259 (51%), Positives = 172/259 (65%), Gaps = 3/259 (1%)
Query: 1 MPSVLENILKDKLLEVSDLKKNHALPI---NINPSDRDFKKALLEKKTSFILECKKASPS 57
M VL I+ DK + V K+ L + PS R F AL +T+FILECKKASPS
Sbjct: 1 MQCVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGARTAFILECKKASPS 60
Query: 58 KGLIRKDFDLLKITKTYEKFASCISVLADSKYFLGSYENIKIVSQHSTKPILCKDFIIDA 117
KG+IR DFD +I Y+ +AS ISVL D KYF GS+ + IVSQ + +PILCKDFIID
Sbjct: 61 KGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDP 120
Query: 118 FQIKLARMMGANAVLLMLSVLDDKNYLELFNLAKSLNMSVLTEVSNQQEIEHLLKLQYDI 177
+QI LAR A+A LLMLSVLDD Y +L +A SL M VLTEVSN++E E + L +
Sbjct: 121 YQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKV 180
Query: 178 IGINNRDLHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQIKALAPYVNGFLVGSSLM 237
+GINNRDL L D+N T +L P L + +ISESGI ++AQ++ L+ + NGFL+GS+LM
Sbjct: 181 VGINNRDLCDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALM 240
Query: 238 KEKDLKKACIKLILGENKV 256
DL A +++LGENKV
Sbjct: 241 AHDDLHAAVRRVLLGENKV 259
>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
Length = 251
Score = 139 bits (349), Expect = 9e-34
Identities = 83/240 (34%), Positives = 134/240 (55%), Gaps = 7/240 (2%)
Query: 12 KLLEVSDLKKNHALPIN-----INPSDRDFKKALLEK-KTSFILECKKASPSKGLIRKDF 65
+L E+ + KK L I+ + + F + L K + I E KKASPS G I D
Sbjct: 2 RLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKERVKIIAEFKKASPSAGDINADA 61
Query: 66 DLLKITKTYEKFASCISVLADSKYFLGSYENIKIVSQHSTKPILCKDFIIDAFQIKLARM 125
L + Y++ A IS+L + YF G ++ + +PIL KDF ID Q+KLA
Sbjct: 62 SLEDFIRMYDELADAISILTEKHYFKGDPAFVRAARNLTCRPILAKDFYIDTVQVKLASS 121
Query: 126 MGANAVLLMLSVLDDKNYLELFNLAKSLNMSVLTEVSNQQEIEHLLK-LQYDIIGINNRD 184
+GA+A+L++ +L + E++ A+ L M L EV +++++E + ++ IIGIN RD
Sbjct: 122 VGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRD 181
Query: 185 LHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQIKALAPYVNGFLVGSSLMKEKDLKK 244
L T + N +L PL+P D ++++ESGI ++K L VN LVG+S+MK ++ ++
Sbjct: 182 LDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGKVNAVLVGTSIMKAENPRR 241
>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Tm0140) From Thermotoga Maritima At 3.0 A Resolution
Length = 242
Score = 136 bits (343), Expect = 4e-33
Identities = 74/204 (36%), Positives = 120/204 (58%), Gaps = 1/204 (0%)
Query: 42 EKKTSFILECKKASPSKGLIRKDFDLLKITKTYEKFASCISVLADSKYFLGSYENIKIVS 101
+++ I E KKASPS G I D L + Y++ A IS+L + YF G ++
Sbjct: 29 KERVKIIAEFKKASPSAGDINADASLEDFIRMYDELADAISILTEKHYFKGDPAFVRAAR 88
Query: 102 QHSTKPILCKDFIIDAFQIKLARMMGANAVLLMLSVLDDKNYLELFNLAKSLNMSVLTEV 161
+ +PIL KDF ID Q+KLA +GA+A+L++ +L + E++ A+ L M L EV
Sbjct: 89 NLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEV 148
Query: 162 SNQQEIEHLLK-LQYDIIGINNRDLHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQI 220
+++++E + ++ IIGIN RDL T + N +L PL+P D ++++ESGI ++
Sbjct: 149 HSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPREL 208
Query: 221 KALAPYVNGFLVGSSLMKEKDLKK 244
K L VN LVG+S+MK ++ ++
Sbjct: 209 KDLRGKVNAVLVGTSIMKAENPRR 232
>pdb|1IGS| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
At 2.0 A Resolution
pdb|1JUL| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
In A Second Orthorhombic Crystal Form
pdb|1JUK| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
In A Trigonal Crystal Form
Length = 248
Score = 127 bits (318), Expect = 3e-30
Identities = 84/252 (33%), Positives = 142/252 (56%), Gaps = 10/252 (3%)
Query: 1 MPSVLENILKDKL---LEVSDLKKNHALPI-NINPSDRDFKKALLEKKTSFILECKKASP 56
MP L+ LKD + L + + PI ++N +F K + T+ I E K+ SP
Sbjct: 1 MPRYLKGWLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNI---TAIIAEYKRKSP 57
Query: 57 SKGLIRKDFDLLKITKTYEKFASCISVLADSKYFLGSYENIKIVSQHSTKPILCKDFIID 116
S + +D ++ +K E++A +S+L + KYF GSYE ++ ++ + PIL KDFI+
Sbjct: 58 SGLDVERD--PIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVSIPILMKDFIVK 115
Query: 117 AFQIKLARMMGANAVLLMLSVLDDKNYLELFNLAKSLNMSVLTEVSNQQEIEHLLKLQYD 176
QI A +GA+ VLL++ +L ++ L A+S M L E++++ +++ L++
Sbjct: 116 ESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRIGAR 175
Query: 177 IIGINNRDLHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQIKALAPY-VNGFLVGSS 235
IGIN+RDL TL+ + + KL ++P + + ++ESGI +I+ L VN FL+GSS
Sbjct: 176 FIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSS 235
Query: 236 LMKEKDLKKACI 247
LM+ + K I
Sbjct: 236 LMRNPEKIKEFI 247
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53| Complex Of Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus With Indole-3-Glycerolphosphate At 2.0 A
Resolution
Length = 247
Score = 125 bits (313), Expect = 1e-29
Identities = 83/251 (33%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 2 PSVLENILKDKL---LEVSDLKKNHALPI-NINPSDRDFKKALLEKKTSFILECKKASPS 57
P L+ LKD + L + + PI ++N +F K + T+ I E K+ SPS
Sbjct: 1 PRYLKGWLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNI---TAIIAEYKRKSPS 57
Query: 58 KGLIRKDFDLLKITKTYEKFASCISVLADSKYFLGSYENIKIVSQHSTKPILCKDFIIDA 117
+ +D ++ +K E++A +S+L + KYF GSYE ++ ++ + PIL KDFI+
Sbjct: 58 GLDVERD--PIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVSIPILMKDFIVKE 115
Query: 118 FQIKLARMMGANAVLLMLSVLDDKNYLELFNLAKSLNMSVLTEVSNQQEIEHLLKLQYDI 177
QI A +GA+ VLL++ +L ++ L A+S M L E++++ +++ L++
Sbjct: 116 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARF 175
Query: 178 IGINNRDLHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQIKALAPY-VNGFLVGSSL 236
IGIN+RDL TL+ + + KL ++P + + ++ESGI +I+ L VN FL+GSSL
Sbjct: 176 IGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSL 235
Query: 237 MKEKDLKKACI 247
M+ + K I
Sbjct: 236 MRNPEKIKEFI 246
>pdb|1DL3|B Chain B, Crystal Structure Of Mutually Generated Monomers Of
Dimeric Phosphoribosylantranilate Isomerase From
Thermotoga Maritim
pdb|1DL3|A Chain A, Crystal Structure Of Mutually Generated Monomers Of
Dimeric Phosphoribosylantranilate Isomerase From
Thermotoga Maritim
Length = 203
Score = 106 bits (265), Expect = 5e-24
Identities = 64/194 (32%), Positives = 110/194 (55%), Gaps = 9/194 (4%)
Query: 255 KVCGLTRIKDAKAVYKNHFIYGGLIFEKSSPRYIKPKEALKITKAVKKLDFVGVFVKDSI 314
K+CG+T ++DA ++ Y G +F S RYI P++A +I+ + ++ VGVFV +
Sbjct: 5 KICGITNLEDALFSVESGADYVGFVFYPKSKRYISPEDARRISVEL-PVERVGVFVNEEP 63
Query: 315 KKIQKIVKKLDLKAVQLYGYSQKEIAQLKKALPKTCAIWQVISVMSAKDLVPKTKEASL- 373
+KI + + L AVQL+G +E +L + + + +W+ + V + +D+
Sbjct: 64 EKILDVASYVQLNAVQLHG---EEPIELCRKIAERILVWKAVGVSNERDMERALNYREFP 120
Query: 374 ILYDTKGDKMGGNGVSFDWEILENVKTPF---MLAGGLNLDNIQKALK-VEALGLDFNSG 429
IL DTK + GG+G +FDW ++ + F +L+GGLN +N++ A+ V +D +SG
Sbjct: 121 ILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSG 180
Query: 430 LEISPGIKNKDKIK 443
+E PG K+ D IK
Sbjct: 181 VEAFPGKKDHDSIK 194
>pdb|1NSJ| Crystal Structure Of Phosphoribosyl Anthranilate Isomerase From
Thermotoga Maritima
Length = 205
Score = 98.6 bits (244), Expect = 1e-21
Identities = 63/195 (32%), Positives = 107/195 (54%), Gaps = 9/195 (4%)
Query: 255 KVCGLTRIKDAKAVYKNHFIYGGLIFEKSSPRYIKPKEALKITKAVKKLDF-VGVFVKDS 313
K+CG+T ++DA ++ G +F S RYI P++A +I+ + F VGVFV +
Sbjct: 5 KICGITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEE 64
Query: 314 IKKIQKIVKKLDLKAVQLYGYSQKEIAQLKKALPKTCAIWQVISVMSAKDLVPKTKEASL 373
+KI + + L AVQL+G +E +L + + + + + + V + +D+
Sbjct: 65 PEKILDVASYVQLNAVQLHG---EEPIELCRKIAERILVIKAVGVSNERDMERALNYREF 121
Query: 374 -ILYDTKGDKMGGNGVSFDWEILENVKTPF---MLAGGLNLDNIQKALK-VEALGLDFNS 428
IL DTK + GG+G +FDW ++ + F +L+GGLN +N++ A+ V +D +S
Sbjct: 122 PILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSS 181
Query: 429 GLEISPGIKNKDKIK 443
G+E PG K+ D IK
Sbjct: 182 GVEAFPGKKDHDSIK 196
>pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1224
Score = 29.3 bits (64), Expect = 0.95
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 310 VKDSIKKIQKIVKKLDLKAVQLYGYSQKEIAQLKKALPKTCAIWQVISVMSAKDLVPKTK 369
++ +++K + + L +K LYG +K LP ++ + A ++P +
Sbjct: 240 IRSALEKGSRFISTLQVK---LYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGE 296
Query: 370 EASLILYDTKGDKMGGNGVSFDWEILENVKTPFMLAGGLNLDNIQKALKVEALGLDFNSG 429
I YD DW++LE +K + G + + + A LDF
Sbjct: 297 ILEHICYDVN-----------DWQMLEMLKP--CVEDGFVIQDRETA-------LDFIGR 336
Query: 430 LEISPGIKNKDKIKRLARILRE 451
+ GIK + +I+ IL++
Sbjct: 337 RGTALGIKKEKRIQYAKDILQK 358
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
Length = 225
Score = 28.9 bits (63), Expect = 1.2
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 311 KDSIKKIQKIVKKLDLKAVQLYGYSQKEIA---QLKKALPKTCAIWQVISVMSAKDLVPK 367
+D KK+ K +KKL L++ Y + ++ LK PKT ++ +++ + D
Sbjct: 94 RDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSD---- 149
Query: 368 TKEASLILYDTKGDKMGGNGVSFDWEILENVKTPFMLAGGLNLDNIQKALKVEALGLDFN 427
+ +LI+ K + G V L +VK + N N +KA++++ GL+
Sbjct: 150 --KKTLIVLPWKEE--GYMNVKLSGRNLPDVKV-IIADNPNNSKNGEKAVRID--GLNVF 202
Query: 428 SGLEISPGIKNKDKIKRLARIL 449
L+ + +D + ++ +L
Sbjct: 203 DMLKYDYLVLTRDMVSKIEEVL 224
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 27.7 bits (60), Expect = 2.8
Identities = 25/76 (32%), Positives = 34/76 (43%), Gaps = 2/76 (2%)
Query: 205 DALIISESGIYSHAQIKALAPYVNGFLVGSSLMKEKDLK--KACIKLILGENKVCGLTRI 262
D +I + S I S I+ L FL G+ L K L K L L ENKV L+ +
Sbjct: 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSL 108
Query: 263 KDAKAVYKNHFIYGGL 278
KD K + + G+
Sbjct: 109 KDLKKLKSLSLEHNGI 124
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 27.3 bits (59), Expect = 3.6
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 205 DALIISESGIYSHAQIKALAPYVNGFLVGSSLMKEKDLK--KACIKLILGENKVCGLTRI 262
D +I + S I S I+ L FL G+ L K L K L L ENK+ L+ +
Sbjct: 44 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSL 103
Query: 263 KDAKAVYKNHFIYGGL 278
KD K + + G+
Sbjct: 104 KDLKKLKSLSLEHNGI 119
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 27.3 bits (59), Expect = 3.6
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 205 DALIISESGIYSHAQIKALAPYVNGFLVGSSLMKEKDLK--KACIKLILGENKVCGLTRI 262
D +I + S I S I+ L FL G+ L K L K L L ENK+ L+ +
Sbjct: 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSL 105
Query: 263 KDAKAVYKNHFIYGGL 278
KD K + + G+
Sbjct: 106 KDLKKLKSLSLEHNGI 121
>pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 272
Score = 26.9 bits (58), Expect = 4.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 313 SIKKIQKIVKKLDLKAVQLYGYSQKEIAQLKKALPKTCAIWQVISVMSAKD 363
SIK IQKI K + + A Y +++E+ + + A+++ + + +D
Sbjct: 12 SIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPED 62
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 26.9 bits (58), Expect = 4.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 313 SIKKIQKIVKKLDLKAVQLYGYSQKEIAQLKKALPKTCAIWQVISVMSAKD 363
SIK IQKI K + + A Y +++E+ + + A+++ + +D
Sbjct: 9 SIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPED 59
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,427,612
Number of Sequences: 13198
Number of extensions: 98202
Number of successful extensions: 253
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 15
length of query: 452
length of database: 2,899,336
effective HSP length: 91
effective length of query: 361
effective length of database: 1,698,318
effective search space: 613092798
effective search space used: 613092798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)