BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646202|ref|NP_208072.1| anthranilate synthase
component II [Helicobacter pylori 26695]
(335 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthr... 227 1e-60
pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase... 177 2e-45
pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed Wi... 27 2.5
pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell... 27 2.5
pdb|3SEB| Staphylococcal Enterotoxin B 27 2.5
pdb|1CLH| Cyclophilin (Nmr, 12 Structures) 27 3.3
pdb|1KFL|A Chain A, Crystal Structure Of Phenylalanine-Regu... 27 4.3
pdb|1QR7|D Chain D, Crystal Structure Of Phenylalanine-Regu... 27 4.3
pdb|1A8S| Chloroperoxidase FPROPIONATE COMPLEX 26 5.6
pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-On... 26 5.6
pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc 25 9.5
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(Current Name, Pectobacterium Carotovorum)
pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(Current Name, Pectobacterium Carotovorum)
pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
Length = 345
Score = 227 bits (579), Expect = 1e-60
Identities = 130/317 (41%), Positives = 181/317 (57%), Gaps = 2/317 (0%)
Query: 4 ILNALYHQKDLNDEEVKKLFTLIIHEKVSPVQLGAILCALKIKGESFKEISVAATTLLEH 63
IL L+ + + EE +LF I+ ++ QL A L ++K++GE +EI+ AA+ LL
Sbjct: 16 ILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLAD 75
Query: 64 APKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSH-SGSADL 122
A D D GTGGDG +INIST +A +A+S G +AKHG+RSV +GS DL
Sbjct: 76 AQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDL 135
Query: 123 LENLGVNIEMNPTQLENCFKQTHFGFLFAPLYHQSFKKSAPLRKELFTKTIFNCLGPLIN 182
L+ G+ ++M+ + FLFAP YH F+ + P+R++L T+TIFN LGPLIN
Sbjct: 136 LQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLIN 195
Query: 183 PLRPKIQLLGVYDKSLCKTMALALKALGVKRAMVVNGGGTDEIVLHDITHACELKNNGIL 242
P RP L+GVY L +A ALK LG K A VV+GGG DE+ +H T EL N I
Sbjct: 196 PARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIE 255
Query: 243 EYDLSAKDFDLPPYDLKELQIENAQESTQACLDILENKGKDSHTMVVVANVASLLYLSHK 302
Y LS +DF L Y L LQ +E+ +L+ KG +H V ANVA LL L +
Sbjct: 256 SYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQ 315
Query: 303 AKDLKEGVSMTLEHLKT 319
+L+ + LE +++
Sbjct: 316 -DNLRHNAQLALETIRS 331
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
Length = 345
Score = 177 bits (448), Expect = 2e-45
Identities = 121/326 (37%), Positives = 178/326 (54%), Gaps = 14/326 (4%)
Query: 1 MKEILNALYHQKDLNDEEVKKLFTLIIHEKVSPVQLGAILCALKIKGESFKEISVAATTL 60
+ EIL L ++ DL E ++L II +V + + AIL AL++KGES EI A +
Sbjct: 3 INEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAM 62
Query: 61 LEHAPKPFNSGLDL---IDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSHS 117
E A K +D+ ID GTGGDGL T+N+ST +A++ S + +AKHG+R+VS S
Sbjct: 63 RELAIK-----IDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAVSGKS 116
Query: 118 GSADLLENLGVNIEMNPTQLENCFKQTHFGFLFAPLYHQSFKKSAPLRKELFTKTIFNCL 177
GSAD+LE LG NI + P + + +T+F FLFA YH + K A +RK L +TIFN L
Sbjct: 117 GSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNIL 176
Query: 178 GPLINPLRPKIQLLGVYDKSLCKTMALALKALGVKRAMVVNG-GGTDEIVLHDITHACEL 236
GPL NP K QL+GV+ K ++ + L + ++V G G DE+ T +
Sbjct: 177 GPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIV 236
Query: 237 KNNGILEYDLSAKDFDLPPYDLKELQIENAQESTQACLDILENKGKDSHTM-VVVANVAS 295
GI E L+ DF + P +++L + +A++S A + GKD H + N A
Sbjct: 237 SKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDS--AIKIVRAFLGKDEHVAEFIKINTAV 294
Query: 296 LLYLSHKAKDLKEGVSMTLEHLKTKA 321
L+ + D +EG +HL K+
Sbjct: 295 ALFALDRVGDFREGYEYA-DHLIEKS 319
>pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SE4| Staphylococcal Enterotoxin B Complexed With Lactose
pdb|1SE3| Staphylococcal Enterotoxin B Complexed With Gm3 Trisaccharide
pdb|1SBB|B Chain B, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1D5Z|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D5M|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D6E|C Chain C, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|2SEB|D Chain D, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
Length = 239
Score = 27.3 bits (59), Expect = 2.5
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 226 VLHDITHACELKNNGI---LEYDL--SAKDFDLPPYDLKELQIENAQESTQACLDILENK 280
VL+D H + I L +DL S KD L YD ++ +N L +K
Sbjct: 26 VLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKD---------LADK 76
Query: 281 GKDSHTMVVVANVASLLYLSHKAKDL 306
KD + V AN Y S K D+
Sbjct: 77 YKDKYVDVFGANYYYQCYFSKKTNDI 102
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
pdb|1GOZ|B Chain B, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 27.3 bits (59), Expect = 2.5
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 226 VLHDITHACELKNNGI---LEYDL--SAKDFDLPPYDLKELQIENAQESTQACLDILENK 280
VL+D H + I L +DL S KD L YD ++ +N L +K
Sbjct: 26 VLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKD---------LADK 76
Query: 281 GKDSHTMVVVANVASLLYLSHKAKDL 306
KD + V AN Y S K D+
Sbjct: 77 YKDKYVDVFGANYYYQCYFSKKTNDI 102
>pdb|3SEB| Staphylococcal Enterotoxin B
Length = 238
Score = 27.3 bits (59), Expect = 2.5
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 226 VLHDITHACELKNNGI---LEYDL--SAKDFDLPPYDLKELQIENAQESTQACLDILENK 280
VL+D H + I L +DL S KD L YD ++ +N L +K
Sbjct: 26 VLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKD---------LADK 76
Query: 281 GKDSHTMVVVANVASLLYLSHKAKDL 306
KD + V AN Y S K D+
Sbjct: 77 YKDKYVDVFGANYYYQCYFSKKTNDI 102
>pdb|1CLH| Cyclophilin (Nmr, 12 Structures)
Length = 166
Score = 26.9 bits (58), Expect = 3.3
Identities = 21/89 (23%), Positives = 34/89 (37%), Gaps = 5/89 (5%)
Query: 217 VNGGGTDEIVLHDITHACELKNNGILEYDLSAKDFDLPPYDLKELQIENAQESTQACLDI 276
VN G + H + ++ G E K P +K + +N +T+ + +
Sbjct: 36 VNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK----PNPPIKN-EADNGLRNTRGTIAM 90
Query: 277 LENKGKDSHTMVVVANVASLLYLSHKAKD 305
KDS T NVA +L H +D
Sbjct: 91 ARTADKDSATSQFFINVADNAFLDHGQRD 119
>pdb|1KFL|A Chain A, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|B Chain B, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|C Chain C, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|D Chain D, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|E Chain E, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|F Chain F, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|G Chain G, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|H Chain H, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
Length = 350
Score = 26.6 bits (57), Expect = 4.3
Identities = 19/68 (27%), Positives = 28/68 (40%)
Query: 54 SVAATTLLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSV 113
++ A T + SGL G DG + I I A A LS+ K G ++
Sbjct: 161 AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAI 220
Query: 114 SSHSGSAD 121
+ SG+ D
Sbjct: 221 VNTSGNGD 228
>pdb|1QR7|D Chain D, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1GG1|B Chain B, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1QR7|A Chain A, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|B Chain B, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|C Chain C, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1GG1|D Chain D, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|A Chain A, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|C Chain C, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
Length = 350
Score = 26.6 bits (57), Expect = 4.3
Identities = 19/68 (27%), Positives = 28/68 (40%)
Query: 54 SVAATTLLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSV 113
++ A T + SGL G DG + I I A A LS+ K G ++
Sbjct: 161 AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAI 220
Query: 114 SSHSGSAD 121
+ SG+ D
Sbjct: 221 VNTSGNGD 228
>pdb|1A8S| Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 26.2 bits (56), Expect = 5.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 17 EEVKKLF--TLIIH---EKVSPVQLGAILCALKIKGESFKEISVAATTLLEHAPKPFNSG 71
E++KK+ TL++H ++V P++ I A +KG + K S A L + N+
Sbjct: 207 EDLKKIDVPTLVVHGDADQVVPIEASGIASAALVKGSTLKIYSGAPHGLTDTHKDQLNAD 266
Query: 72 L 72
L
Sbjct: 267 L 267
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 26.2 bits (56), Expect = 5.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 166 KELFTKTIFNCLGPLINPLRPKIQLLGVYDKSLCKT---MALALKALGVKRAMVVNG 219
K+++T +I C+ LRP+++ G+ D T +A +K G+ A + +G
Sbjct: 224 KQVYTVSIMPCIAKKYEGLRPELKSSGMRDIDATLTTRELAYMIKKAGIDFAKLPDG 280
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 25.4 bits (54), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 10 HQKDLNDEEVKKLFTLIIHEKVSPVQLG 37
H+K D + K+FT II E V+ +LG
Sbjct: 15 HRKAAQDAKRGKIFTKIIRELVTAAKLG 42
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,843,190
Number of Sequences: 13198
Number of extensions: 74190
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 11
length of query: 335
length of database: 2,899,336
effective HSP length: 89
effective length of query: 246
effective length of database: 1,724,714
effective search space: 424279644
effective search space used: 424279644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)