BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644759|ref|NP_206929.1| hypothetical protein
[Helicobacter pylori 26695]
         (141 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FXK|B  Chain B, Crystal Structure Of Archaeal Prefoldin...    27  0.68
pdb|1FXK|A  Chain A, Crystal Structure Of Archaeal Prefoldin...    27  0.68
pdb|1J7N|B  Chain B, Anthrax Toxin Lethal Factor >gi|1697482...    26  1.5
pdb|1HBR|C  Chain C, R-State Form Of Chicken Hemoglobin D >g...    26  1.5
pdb|1JK0|A  Chain A, Ribonucleotide Reductase Y2y4 Heterodimer     25  4.4
pdb|1FP2|A  Chain A, Crystal Structure Analysis Of Isoflavon...    25  4.4
pdb|1JEH|B  Chain B, Crystal Structure Of Yeast E3, Lipoamid...    25  4.4
pdb|1WDN|A  Chain A, Glutamine-Binding Protein >gi|1943541|p...    24  7.5
pdb|1TFR|    Rnase H From Bacteriophage T4                         23  9.8
pdb|1DXL|A  Chain A, Dihydrolipoamide Dehydrogenase Of Glyci...    23  9.8

>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
          Length = 109

 Score = 27.3 bits (59), Expect = 0.68
 Identities = 16/80 (20%), Positives = 38/80 (47%)

Query: 31  QLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDRNKRK 90
           Q L+Q  +    +      ++N+    ++E  R    A+  K+    L  +++++  +  
Sbjct: 10  QQLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL 69

Query: 91  KEILEAIANKKKTMTMKEYR 110
           +E LE +  ++KT+  +E R
Sbjct: 70  QEKLETLQLREKTIERQEER 89



>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
          Length = 107

 Score = 27.3 bits (59), Expect = 0.68
 Identities = 16/80 (20%), Positives = 38/80 (47%)

Query: 31  QLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDRNKRK 90
           Q L+Q  +    +      ++N+    ++E  R    A+  K+    L  +++++  +  
Sbjct: 11  QQLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL 70

Query: 91  KEILEAIANKKKTMTMKEYR 110
           +E LE +  ++KT+  +E R
Sbjct: 71  QEKLETLQLREKTIERQEER 90



>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
 pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
 pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
           Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
          Length = 776

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 15/64 (23%), Positives = 29/64 (44%)

Query: 50  EVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEY 109
           E NK     K+E+R   + +  K + K++  +  +     KKE  E +  K  +  ++ Y
Sbjct: 15  EKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMY 74

Query: 110 REEG 113
           +  G
Sbjct: 75  KAIG 78



>pdb|1HBR|C Chain C, R-State Form Of Chicken Hemoglobin D
 pdb|1HBR|A Chain A, R-State Form Of Chicken Hemoglobin D
          Length = 141

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 8/77 (10%)

Query: 28  DDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDRN 87
           +DK+L++QA + A S   EF AE   R+     +  K Y   F      +L+  S + R 
Sbjct: 5   EDKKLIQQAWEKAASHQEEFGAEALTRMFTTYPQ-TKTYFPHF------DLSPGSDQVRG 57

Query: 88  KRKKEILEAIANKKKTM 104
             KK +L A+ N  K +
Sbjct: 58  HGKK-VLGALGNAVKNV 73



>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
          Length = 419

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 36  AGKVAPSEVPEFRAEVNKRLAVMKEEDRKN---YKADFKKAMDKNLASLS--QEDRNKRK 90
           A  ++  E+ + ++ +NK L  ++EE+R      K    K  + + A L   Q  R+K K
Sbjct: 31  ADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLK 90

Query: 91  K-EILEAIANKKKTMTM 106
           + E  E + N+ K  T+
Sbjct: 91  EMEKEEPLLNEDKERTV 107



>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
           O-Methyltransferase
          Length = 352

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 2/42 (4%)

Query: 57  VMKEEDRKNYKADFKKAMDKNLASLSQEDRNKR--KKEILEA 96
           V+ ++  +N     K  MD N+A L+ ++RN+   KK  +EA
Sbjct: 290 VIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEA 331



>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
          Length = 478

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 9/61 (14%)

Query: 45  PEFRAEVNKRLAVMKEEDRKNYKADFKKAM---------DKNLASLSQEDRNKRKKEILE 95
           P+  A ++  +A   ++  K    DFK +          DKN+  +  ED    K+E LE
Sbjct: 216 PQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLE 275

Query: 96  A 96
           A
Sbjct: 276 A 276



>pdb|1WDN|A Chain A, Glutamine-Binding Protein
 pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
 pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
          Length = 226

 Score = 23.9 bits (50), Expect = 7.5
 Identities = 13/42 (30%), Positives = 19/42 (44%)

Query: 24  FKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKN 65
           FK++ D    +Q G   P    E R +VN  L  ++E    N
Sbjct: 173 FKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYN 214



>pdb|1TFR|   Rnase H From Bacteriophage T4
          Length = 305

 Score = 23.5 bits (49), Expect = 9.8
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 49  AEVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIAN----KKKTM 104
           AE++    ++K  D+K+  A  K   D     +  E     K  I+EAIAN     K  +
Sbjct: 185 AEIDCMTKILKG-DKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLL 243

Query: 105 TMKEYR--EEGLDLHD 118
           T  EY   +E L L D
Sbjct: 244 TESEYNRYKENLVLID 259



>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
           From Pisum Sativum
 pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
           From Pisum Sativum
 pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
           From Pisum Sativum
 pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
           From Pisum Sativum
          Length = 470

 Score = 23.5 bits (49), Expect = 9.8
 Identities = 11/35 (31%), Positives = 20/35 (56%), Gaps = 5/35 (14%)

Query: 17  LFLNASDFKSM-----DDKQLLEQAGKVAPSEVPE 46
           +    SD KS+     D+K+++   G +A SE+P+
Sbjct: 144 IIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPK 178



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.314    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 747,336
Number of Sequences: 13198
Number of extensions: 25333
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 10
length of query: 141
length of database: 2,899,336
effective HSP length: 79
effective length of query: 62
effective length of database: 1,856,694
effective search space: 115115028
effective search space used: 115115028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)