BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645896|ref|NP_208075.1| hypothetical protein
[Helicobacter pylori 26695]
(485 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulan... 33 0.093
pdb|1GNX|A Chain A, B-Glucosidase From Streptomyces Sp >gi|... 28 3.0
pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-... 27 6.7
pdb|4CCX| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt... 27 6.7
pdb|3CCX| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt... 27 6.7
pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Perox... 27 6.7
pdb|1CYF| Mol_id: 1; Molecule: Cytochrome C Peroxidase; C... 27 6.7
pdb|1CCJ| Conformer Selection By Ligand Binding Observed ... 27 6.7
pdb|2CEP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W... 27 6.7
pdb|1CCK| Altering Substrate Specificity Of Cytochrome C ... 27 6.7
pdb|7CCP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W... 27 6.7
pdb|1CMU| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5... 27 6.7
pdb|1CCG| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt... 27 6.7
pdb|1CCA| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5... 27 6.7
pdb|2CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu... 27 6.7
pdb|1AA4| Specificity Of Ligand Binding In A Buried Polar... 27 6.7
pdb|1CCL| Probing The Strength And Character Of An Asp-Hi... 27 6.7
pdb|6CCP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W... 27 6.7
pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into C... 27 6.7
pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, I... 27 6.7
pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, I... 27 6.7
pdb|1A2G| Probing The Strength And Character Of An Asp-Hi... 27 6.7
pdb|4CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu... 27 6.7
pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrom... 27 6.7
pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome ... 27 6.7
pdb|1CPE| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W... 27 6.7
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cyt... 27 6.7
pdb|1A2F| Probing The Strength And Character Of An Asp-Hi... 27 6.7
pdb|3CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu... 27 6.7
pdb|1CPG| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W... 27 6.7
pdb|2PCC|A Chain A, Yeast Cytochrome C Peroxidase (Ccp) Com... 27 6.7
pdb|1CCC| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5... 27 6.7
pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain ... 27 6.7
pdb|5CCP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W... 27 6.7
pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Perox... 27 6.7
pdb|1CCB| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5... 27 6.7
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 26 8.7
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
Length = 449
Score = 32.7 bits (73), Expect = 0.093
Identities = 29/140 (20%), Positives = 59/140 (41%), Gaps = 18/140 (12%)
Query: 326 NPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASFAMGNESSITH 385
N D QL + ++++ +L H A++L + G+ + + N S+A+ +
Sbjct: 183 NKDLQLAI--------DVSHHLLVAHGRAVTLFRELGISGEIGIAPNTSWAVPYRRTKED 234
Query: 386 LSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHMIYPRDFQKIISRSSDWMFKAMTMPH 445
+ ACL++ + L F YPK + D+ + + + M + H
Sbjct: 235 MEACLRVN-GWSGDWYLDPIYFGEYPK---------FMLDWYENLGYKPPIVDGDMELIH 284
Query: 446 PPVDFVNPQDIISAIKRFAP 465
P+DF+ S++ R+ P
Sbjct: 285 QPIDFIGINYYTSSMNRYNP 304
>pdb|1GNX|A Chain A, B-Glucosidase From Streptomyces Sp
pdb|1GNX|B Chain B, B-Glucosidase From Streptomyces Sp
Length = 479
Score = 27.7 bits (60), Expect = 3.0
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 415 GPNIHMIYPRDFQKIISRSSDWMFKA---MTMPHPPVDFVNPQDIISAIKRFAPHLLKED 471
GP + YP D K + +DW F + + H +DF+ + ++P L+ E
Sbjct: 265 GPMLQGAYPEDLVKDTAGLTDWSFVRDGDLRLAHQKLDFL-------GVNYYSPTLVSEA 317
Query: 472 APSNTNET 479
S T+ +
Sbjct: 318 DGSGTHNS 325
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|4CCX| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With
Met-Lys-Thr Inserted At The N-Terminus, Thr 53 Replaced
By Ile, Ala 147 Replaced By Met, Asp 152 Replaced By Gly
(Ins(M1,K2,T3),T53i,A147m,D152g)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|3CCX| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With
Met-Lys-Thr Inserted At The N-Terminus, Thr 52 Replaced
By Ile, Ala 147 Replaced By Tyr, Asp 152 Replaced By Gly
(Ins(M1,K2,T3),T52i,A147y,D152g)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 241 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 285
>pdb|1CYF| Mol_id: 1; Molecule: Cytochrome C Peroxidase; Chain: Null; Ec:
1.11.1.5; Engineered: Yes; Mutation: Ins(Met Ile At
N-Terminus), C128a, A193c
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CCJ| Conformer Selection By Ligand Binding Observed With Protein
Crystallography
pdb|1CCI| How Flexible Are Proteins? Trapping Of A Flexible Loop
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|2CEP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Met 230 Replaced By Ile (Mi,M230i)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CCK| Altering Substrate Specificity Of Cytochrome C Peroxidase Towards
A Small Molecular Substrate Peroxidase By Substituting
Tyrosine For Phe 202
Length = 291
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|7CCP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Arg 48 Replaced By Leu (Mi,R48l)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CMU| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With
Initial Met, Lys, Thr And With Trp 191 Replaced By Gly
And Asp 235 Replaced By Asn (Ins(M1,K2,T3),W191g,D235n)
And Soaked In 40 Millimolar Potassium (K+)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1CCG| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With His
175 Replaced By Gly (H175g) Complexed With Imidazole
pdb|1CCE| Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With His
175 Replaced By Gly (H175g)
Length = 291
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|1CCA| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Wild Type
Length = 297
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 248 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 292
>pdb|2CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Asp 235
Replaced By Asn (D235N)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1AA4| Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1RYC| Cytochrome C Peroxidase W191g From Saccharomyces Cerevisiae
pdb|1CMP| Cytochrome C Peroxidase (Recombinant Yeast, Ccp-Mkt)
(E.C.1.11.1.5) Mutant With Trp 191 Replaced By Gly
(W191g) Complexed With 1,2-Dimethylimadazole
pdb|1CMT| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With
Initial Met, Lys, Thr And With Trp 191 Replaced By Gly
(Ins(M1,K2,T3),W191g) And Soaked In 40 Millimolar
Potassium (K+)
pdb|1CMQ| Cytochrome C Peroxidase (Recombinant Yeast, Ccp-Mkt)
(E.C.1.11.1.5) Mutant With Trp 191 Replaced By Gly
(W191g)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1CCL| Probing The Strength And Character Of An Asp-His-X Hydrogen Bond
By Introducing Buried Charges
Length = 291
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|6CCP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Arg 48 Replaced By Lys (Mi,R48k)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 243 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 287
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature.
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature
Length = 292
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 243 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 287
>pdb|1A2G| Probing The Strength And Character Of An Asp-His-X Hydrogen Bond
By Introducing Buried Charges
Length = 291
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|4CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Trp 51
Replaced By Phe (W51F)
Length = 293
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 244 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 288
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|2CYP| Cytochrome c Peroxidase (E.C.1.11.1.5) (Ferrocytochrome c (Colon)
H2O2 Reductase)
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1CPE| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Trp 191 Replaced By Gly (Mi,W191g)
Complexed With A Potassium Ion (K+)
pdb|1CPD| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Trp 191 Replaced By Gly (Mi,W191g)
Complexed With An Ammonium Ion (Nh4+)
pdb|1CPF| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Trp 191 Replaced By Gly (Mi,W191g)
Complexed With A Tris (+) Ion
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
Length = 291
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|1A2F| Probing The Strength And Character Of An Asp-His-X Hydrogen Bond
By Introducing Buried Charges
Length = 291
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|3CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Trp 191
Replaced By Phe (W191F)
pdb|1DCC| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Trp 191 Replaced By Phe (Mi,W191f)
Complexed With Dioxygen
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CPG| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Trp 191 Replaced By Gln (Mi,W191q)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|2PCC|A Chain A, Yeast Cytochrome C Peroxidase (Ccp) Complex With Yeast
Iso-1-Cytochrome C
pdb|2PCC|C Chain C, Yeast Cytochrome C Peroxidase (Ccp) Complex With Yeast
Iso-1-Cytochrome C
pdb|2PCB|A Chain A, Yeast Cytochrome C Peroxidase (Ccp) Complex With Horse
Heart Cytochrome C
pdb|2PCB|C Chain C, Yeast Cytochrome C Peroxidase (Ccp) Complex With Horse
Heart Cytochrome C
pdb|1CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CCC| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With Asp
235 Replaced By Ala (D235a)
Length = 297
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 248 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 292
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|5CCP| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And His 52 Replaced By Leu (Mi,H52l)
Length = 296
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 240 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 284
>pdb|1CCB| Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With Asp
235 Replaced By Glu (D235e)
Length = 297
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 40 IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
+ +++ + N + F KD + L+ +T K AP P KTL
Sbjct: 248 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 292
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 26.2 bits (56), Expect = 8.7
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 303 VLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTG 362
V+N G D+ + D I+ +NP+ + +L K+ E+ +++ N TG
Sbjct: 284 VVNHGTEQDNEEFPEKDNEIFIINPEGEFIL----TKNWEMTGRFIEK--------NITG 331
Query: 363 LIEYLYLLKNA--SFAMGNESSI 383
+YLY + A GN++ I
Sbjct: 332 K-DYLYYFNRSYNKIAPGNKAYI 353
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,774,627
Number of Sequences: 13198
Number of extensions: 118473
Number of successful extensions: 405
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 37
length of query: 485
length of database: 2,899,336
effective HSP length: 92
effective length of query: 393
effective length of database: 1,685,120
effective search space: 662252160
effective search space used: 662252160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)