BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645896|ref|NP_208075.1| hypothetical protein
[Helicobacter pylori 26695]
         (485 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QOX|A  Chain A, Beta-Glucosidase From Bacillus Circulan...    33  0.093
pdb|1GNX|A  Chain A, B-Glucosidase From Streptomyces Sp >gi|...    28  3.0
pdb|1JCI|A  Chain A, Stabilization Of The Engineered Cation-...    27  6.7
pdb|4CCX|    Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt...    27  6.7
pdb|3CCX|    Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt...    27  6.7
pdb|1KXM|A  Chain A, Crystal Structure Of Cytochrome C Perox...    27  6.7
pdb|1CYF|    Mol_id: 1; Molecule: Cytochrome C Peroxidase; C...    27  6.7
pdb|1CCJ|    Conformer Selection By Ligand Binding Observed ...    27  6.7
pdb|2CEP|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    27  6.7
pdb|1CCK|    Altering Substrate Specificity Of Cytochrome C ...    27  6.7
pdb|7CCP|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    27  6.7
pdb|1CMU|    Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5...    27  6.7
pdb|1CCG|    Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt...    27  6.7
pdb|1CCA|    Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5...    27  6.7
pdb|2CCP|    Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu...    27  6.7
pdb|1AA4|    Specificity Of Ligand Binding In A Buried Polar...    27  6.7
pdb|1CCL|    Probing The Strength And Character Of An Asp-Hi...    27  6.7
pdb|6CCP|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    27  6.7
pdb|1KRJ|A  Chain A, Engineering Calcium-Binding Site Into C...    27  6.7
pdb|1DSE|A  Chain A, Cytochrome C Peroxidase H175g Mutant, I...    27  6.7
pdb|1DS4|A  Chain A, Cytochrome C Peroxidase H175g Mutant, I...    27  6.7
pdb|1A2G|    Probing The Strength And Character Of An Asp-Hi...    27  6.7
pdb|4CCP|    Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu...    27  6.7
pdb|1KOK|A  Chain A, Crystal Structure Of Mesopone Cytochrom...    27  6.7
pdb|1BVA|A  Chain A, Manganese Binding Mutant In Cytochrome ...    27  6.7
pdb|1CPE|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    27  6.7
pdb|1DJ5|A  Chain A, Crystal Structure Of R48a Mutant Of Cyt...    27  6.7
pdb|1A2F|    Probing The Strength And Character Of An Asp-Hi...    27  6.7
pdb|3CCP|    Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu...    27  6.7
pdb|1CPG|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    27  6.7
pdb|2PCC|A  Chain A, Yeast Cytochrome C Peroxidase (Ccp) Com...    27  6.7
pdb|1CCC|    Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5...    27  6.7
pdb|1JDR|A  Chain A, Crystal Structure Of A Proximal Domain ...    27  6.7
pdb|5CCP|    Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant W...    27  6.7
pdb|1KXN|A  Chain A, Crystal Structure Of Cytochrome C Perox...    27  6.7
pdb|1CCB|    Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5...    27  6.7
pdb|1K90|C  Chain C, Crystal Structure Of The Edema Factor W...    26  8.7
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
 pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
          Length = 449

 Score = 32.7 bits (73), Expect = 0.093
 Identities = 29/140 (20%), Positives = 59/140 (41%), Gaps = 18/140 (12%)

Query: 326 NPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASFAMGNESSITH 385
           N D QL +        ++++ +L  H  A++L  + G+   + +  N S+A+    +   
Sbjct: 183 NKDLQLAI--------DVSHHLLVAHGRAVTLFRELGISGEIGIAPNTSWAVPYRRTKED 234

Query: 386 LSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHMIYPRDFQKIISRSSDWMFKAMTMPH 445
           + ACL++   +     L    F  YPK         +  D+ + +      +   M + H
Sbjct: 235 MEACLRVN-GWSGDWYLDPIYFGEYPK---------FMLDWYENLGYKPPIVDGDMELIH 284

Query: 446 PPVDFVNPQDIISAIKRFAP 465
            P+DF+      S++ R+ P
Sbjct: 285 QPIDFIGINYYTSSMNRYNP 304
>pdb|1GNX|A Chain A, B-Glucosidase From Streptomyces Sp
 pdb|1GNX|B Chain B, B-Glucosidase From Streptomyces Sp
          Length = 479

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 415 GPNIHMIYPRDFQKIISRSSDWMFKA---MTMPHPPVDFVNPQDIISAIKRFAPHLLKED 471
           GP +   YP D  K  +  +DW F     + + H  +DF+        +  ++P L+ E 
Sbjct: 265 GPMLQGAYPEDLVKDTAGLTDWSFVRDGDLRLAHQKLDFL-------GVNYYSPTLVSEA 317

Query: 472 APSNTNET 479
             S T+ +
Sbjct: 318 DGSGTHNS 325
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
           Cytochrome C Peroxidase (Ccp)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|4CCX|   Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With
           Met-Lys-Thr Inserted At The N-Terminus, Thr 53 Replaced
           By Ile, Ala 147 Replaced By Met, Asp 152 Replaced By Gly
           (Ins(M1,K2,T3),T53i,A147m,D152g)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|3CCX|   Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With
           Met-Lys-Thr Inserted At The N-Terminus, Thr 52 Replaced
           By Ile, Ala 147 Replaced By Tyr, Asp 152 Replaced By Gly
           (Ins(M1,K2,T3),T52i,A147y,D152g)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
           Proposed Electron Transfer Pathway Excised To Form A
           Ligand Binding Channel
          Length = 290

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 241 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 285
>pdb|1CYF|   Mol_id: 1; Molecule: Cytochrome C Peroxidase; Chain: Null; Ec:
           1.11.1.5; Engineered: Yes; Mutation: Ins(Met Ile At
           N-Terminus), C128a, A193c
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CCJ|   Conformer Selection By Ligand Binding Observed With Protein
           Crystallography
 pdb|1CCI|   How Flexible Are Proteins? Trapping Of A Flexible Loop
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|2CEP|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Met 230 Replaced By Ile (Mi,M230i)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CCK|   Altering Substrate Specificity Of Cytochrome C Peroxidase Towards
           A Small Molecular Substrate Peroxidase By Substituting
           Tyrosine For Phe 202
          Length = 291

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|7CCP|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Arg 48 Replaced By Leu (Mi,R48l)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CMU|   Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With
           Initial Met, Lys, Thr And With Trp 191 Replaced By Gly
           And Asp 235 Replaced By Asn (Ins(M1,K2,T3),W191g,D235n)
           And Soaked In 40 Millimolar Potassium (K+)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1CCG|   Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With His
           175 Replaced By Gly (H175g) Complexed With Imidazole
 pdb|1CCE|   Cytochrome C Peroxidase (E.C.1.11.1.5) (Ccp-Mkt) Mutant With His
           175 Replaced By Gly (H175g)
          Length = 291

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|1CCA|   Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Wild Type
          Length = 297

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 248 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 292
>pdb|2CCP|   Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Asp 235
           Replaced By Asn (D235N)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1AA4|   Specificity Of Ligand Binding In A Buried Polar Cavity Of
           Cytochrome C Peroxidase
 pdb|1RYC|   Cytochrome C Peroxidase W191g From Saccharomyces Cerevisiae
 pdb|1CMP|   Cytochrome C Peroxidase (Recombinant Yeast, Ccp-Mkt)
           (E.C.1.11.1.5) Mutant With Trp 191 Replaced By Gly
           (W191g) Complexed With 1,2-Dimethylimadazole
 pdb|1CMT|   Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With
           Initial Met, Lys, Thr And With Trp 191 Replaced By Gly
           (Ins(M1,K2,T3),W191g) And Soaked In 40 Millimolar
           Potassium (K+)
 pdb|1CMQ|   Cytochrome C Peroxidase (Recombinant Yeast, Ccp-Mkt)
           (E.C.1.11.1.5) Mutant With Trp 191 Replaced By Gly
           (W191g)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1CCL|   Probing The Strength And Character Of An Asp-His-X Hydrogen Bond
           By Introducing Buried Charges
          Length = 291

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|6CCP|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Arg 48 Replaced By Lys (Mi,R48k)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
           Peroxidase (Ccp)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
           With Phosphate Bound, Ph 6, 100k
          Length = 292

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 243 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 287
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
           Ph 6, 100k
 pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
           Ph 6, Room Temperature.
 pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
           Ph 7, Room Temperature.
 pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
           Ph 5, Room Temperature
          Length = 292

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 243 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 287
>pdb|1A2G|   Probing The Strength And Character Of An Asp-His-X Hydrogen Bond
           By Introducing Buried Charges
          Length = 291

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|4CCP|   Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Trp 51
           Replaced By Phe (W51F)
          Length = 293

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 244 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 288
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
           (Mpccp)
 pdb|2CYP|   Cytochrome c Peroxidase (E.C.1.11.1.5) (Ferrocytochrome c (Colon)
           H2O2 Reductase)
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|1CPE|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Trp 191 Replaced By Gly (Mi,W191g)
           Complexed With A Potassium Ion (K+)
 pdb|1CPD|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Trp 191 Replaced By Gly (Mi,W191g)
           Complexed With An Ammonium Ion (Nh4+)
 pdb|1CPF|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Trp 191 Replaced By Gly (Mi,W191g)
           Complexed With A Tris (+) Ion
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
           Peroxidase With N-Hydroxyguanidine Bound
 pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
           Peroxidase
          Length = 291

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|1A2F|   Probing The Strength And Character Of An Asp-His-X Hydrogen Bond
           By Introducing Buried Charges
          Length = 291

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 286
>pdb|3CCP|   Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Trp 191
           Replaced By Phe (W191F)
 pdb|1DCC|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Trp 191 Replaced By Phe (Mi,W191f)
           Complexed With Dioxygen
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CPG|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And Trp 191 Replaced By Gln (Mi,W191q)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|2PCC|A Chain A, Yeast Cytochrome C Peroxidase (Ccp) Complex With Yeast
           Iso-1-Cytochrome C
 pdb|2PCC|C Chain C, Yeast Cytochrome C Peroxidase (Ccp) Complex With Yeast
           Iso-1-Cytochrome C
 pdb|2PCB|A Chain A, Yeast Cytochrome C Peroxidase (Ccp) Complex With Horse
           Heart Cytochrome C
 pdb|2PCB|C Chain C, Yeast Cytochrome C Peroxidase (Ccp) Complex With Horse
           Heart Cytochrome C
 pdb|1CCP|   Yeast Cytochrome c Peroxidase (E.C.1.11.1.5)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1CCC|   Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With Asp
           235 Replaced By Ala (D235a)
          Length = 297

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 248 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 292
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
           Variant Of Cytochrome C Peroxidase
          Length = 294

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 289
>pdb|5CCP|   Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
           At N-Terminus And His 52 Replaced By Leu (Mi,H52l)
          Length = 296

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 291
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
           Proposed Electron Transfer Pathway Excised To Form A
           Ligand Binding Channel
          Length = 289

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 240 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 284
>pdb|1CCB|   Cytochrome C Peroxidase (Ccp-Mkt) (E.C.1.11.1.5) Mutant With Asp
           235 Replaced By Glu (D235e)
          Length = 297

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 40  IPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIRKKTL 84
           + +++ + N +  F KD     +  L+  +T  K AP P   KTL
Sbjct: 248 LSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTL 292
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
           3'-Datp
 pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
           Calmodulin
 pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
 pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
           3'-Datp
 pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
           Calmodulin
 pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
           Calmodulin
 pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
           3'-Datp
          Length = 510

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 303 VLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTG 362
           V+N G   D+  +   D  I+ +NP+ + +L     K+ E+    +++        N TG
Sbjct: 284 VVNHGTEQDNEEFPEKDNEIFIINPEGEFIL----TKNWEMTGRFIEK--------NITG 331

Query: 363 LIEYLYLLKNA--SFAMGNESSI 383
             +YLY    +    A GN++ I
Sbjct: 332 K-DYLYYFNRSYNKIAPGNKAYI 353
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,774,627
Number of Sequences: 13198
Number of extensions: 118473
Number of successful extensions: 405
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 37
length of query: 485
length of database: 2,899,336
effective HSP length: 92
effective length of query: 393
effective length of database: 1,685,120
effective search space: 662252160
effective search space used: 662252160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)