BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645897|ref|NP_208076.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(346 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesy... 28 1.2
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed W... 28 1.2
pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Trans... 27 2.6
pdb|1BDB| Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase ... 27 3.4
pdb|1KVK|A Chain A, The Structure Of Binary Complex Between... 26 5.8
pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of... 25 9.9
pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton He... 25 9.9
pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton He... 25 9.9
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 315
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 127 WLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKERSIIASK 186
W +++ + +S L+ E Y + +I K++ + + + + W LKD S+E IA
Sbjct: 80 WHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEW-LKDPSQELEFIADI 138
Query: 187 LNAD 190
LN D
Sbjct: 139 LNQD 142
>pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
Length = 377
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 127 WLYQKSVRQSRSLCLKEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKERSIIASK 186
W +++ + +S L+E + I + + + + +
Sbjct: 134 WHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEW-LKDPSQELEFIADI 192
Query: 187 LNAD 190
LN D
Sbjct: 193 LNQD 196
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Query: 127 WLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKERSIIASK 186
W +++ + +S L+ E Y +I K++ + + + + W LKD S+E IA
Sbjct: 90 WHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LKDPSQELEFIADI 148
Query: 187 LNAD 190
LN D
Sbjct: 149 LNQD 152
>pdb|1BDB| Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From Pseudomonas
Sp. Lb400
Length = 277
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 248 IPFAHLYDTSHSLVDLAKLCANLS---VYIGNASGPLHV-------------NALFDNQS 291
IP A ++D S +LVDL + + + V+ N G +H N +F +
Sbjct: 84 IPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISN 143
Query: 292 IGFYPN 297
GFYPN
Sbjct: 144 AGFYPN 149
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian
Mevalonate Kinase And Atp: Insights Into The Reaction
Mechanism And Human Inherited Disease
Length = 395
Score = 26.2 bits (56), Expect = 5.8
Identities = 15/42 (35%), Positives = 19/42 (44%)
Query: 284 NALFDNQSIGFYPNELSASIARWRPFNERFLGITPPNGSNDM 325
N L D SIG +P E SI +W ER + P N +
Sbjct: 166 NPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV 207
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 25.4 bits (54), Expect = 9.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 2 DFIGFEDLKCKDKENSQKVFVIRNDKLGDFIL 33
D GFE L DKE S +FV R DK G+ I+
Sbjct: 511 DPYGFEWLVVDDKERSVLIFV-RRDKEGNEII 541
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 25.4 bits (54), Expect = 9.9
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 276 NASGPLHVNALFDNQSIGFYPNELSASI-ARWRPFNERFLGITPPN 320
N +G V + ++ FYP E+S+ + + + E +LG T N
Sbjct: 93 NDAGAPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGATVTN 138
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 25.4 bits (54), Expect = 9.9
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 276 NASGPLHVNALFDNQSIGFYPNELSASI-ARWRPFNERFLGITPPN 320
N +G V + ++ FYP E+S+ + + + E +LG T N
Sbjct: 93 NDAGAPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGATVTN 138
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,064,783
Number of Sequences: 13198
Number of extensions: 85969
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 8
length of query: 346
length of database: 2,899,336
effective HSP length: 89
effective length of query: 257
effective length of database: 1,724,714
effective search space: 443251498
effective search space used: 443251498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)