BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645898|ref|NP_208077.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(230 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B4U|A Chain A, Protocatechuate 4,5-Dioxygenase (Ligab)... 29 0.40
pdb|1NBA|A Chain A, N-Carbamoylsarcosine Amidohydrolase (E.... 27 1.5
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 27 2.6
pdb|1DYZ|A Chain A, Oxidised Azurin Ii From Alcaligenes Xyl... 25 9.9
>pdb|1B4U|A Chain A, Protocatechuate 4,5-Dioxygenase (Ligab) In Complex With
Protocatechuate (Pca)
pdb|1B4U|C Chain C, Protocatechuate 4,5-Dioxygenase (Ligab) In Complex With
Protocatechuate (Pca)
pdb|1BOU|A Chain A, Three-Dimensional Structure Of Ligab
pdb|1BOU|C Chain C, Three-Dimensional Structure Of Ligab
Length = 139
Score = 29.3 bits (64), Expect = 0.40
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 105 EYANSKGVKIFYISNRTQKN---KAFTLKTLKSFKLPQV-SEESVLLKEKGKPKAVRREL 160
E+ + G ++F + R +K F + +K+ + ++ES L E A + +
Sbjct: 16 EFDDIPGTRVF-TAQRARKGYNLNQFAMSLMKAENRERFKADESAYLDEWNLTPAAKAAV 74
Query: 161 VAKDYAIVLQVGDTLHDFDAIFAKDAKNSQ 190
+A+DY ++ G ++ +F+ D K+ Q
Sbjct: 75 LARDYNAMIDEGGNVYFLSKLFSTDGKSFQ 104
>pdb|1NBA|A Chain A, N-Carbamoylsarcosine Amidohydrolase (E.C.3.5.1.59)
pdb|1NBA|C Chain C, N-Carbamoylsarcosine Amidohydrolase (E.C.3.5.1.59)
pdb|1NBA|D Chain D, N-Carbamoylsarcosine Amidohydrolase (E.C.3.5.1.59)
pdb|1NBA|B Chain B, N-Carbamoylsarcosine Amidohydrolase (E.C.3.5.1.59)
Length = 264
Score = 27.3 bits (59), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (52%)
Query: 88 FEKEGSLTLIPGALDFLEYANSKGVKIFYISN 119
F G T+IP E A +KGV +FY +N
Sbjct: 63 FSCPGMETIIPNVQRINEAARAKGVPVFYTTN 94
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 26.6 bits (57), Expect = 2.6
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 161 VAKDYAIVLQVGDTLHDF--DAIFAKDAKNSQEQRAKVLQNAQKFGTEWIILPNSLYGTW 218
VAK + L D F + + D NS+E+ ++ ++ T + P S+Y TW
Sbjct: 184 VAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRR-STLRKLKPESMYETW 242
Query: 219 EDE 221
ED+
Sbjct: 243 EDD 245
>pdb|1DYZ|A Chain A, Oxidised Azurin Ii From Alcaligenes Xylosoxidans
pdb|1DZ0|A Chain A, Reduced Azurin Ii From Alcaligenes Xylosoxidans
Length = 129
Score = 24.6 bits (52), Expect = 9.9
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 35 KMAKMALDNNLKLVKD-KKPAVILD 58
KMAK+A+ +NL L KD K AV D
Sbjct: 38 KMAKVAMGHNLVLTKDADKQAVATD 62
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,322,779
Number of Sequences: 13198
Number of extensions: 50807
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 4
length of query: 230
length of database: 2,899,336
effective HSP length: 85
effective length of query: 145
effective length of database: 1,777,506
effective search space: 257738370
effective search space used: 257738370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)