BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645899|ref|NP_208078.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(182 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BBP|A Chain A, Bilin Binding Protein (BBP) >gi|229697|... 26 3.1
pdb|1DYV|A Chain A, Crystal Structure Of Circularly Permute... 25 4.0
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In... 25 5.2
pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clath... 24 8.9
pdb|1GW5|M Chain M, Ap2 Clathrin Adaptor Core 24 8.9
pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 24 8.9
pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35 >g... 24 8.9
pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 C... 24 8.9
pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 24 8.9
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 24 8.9
>pdb|1BBP|A Chain A, Bilin Binding Protein (BBP)
pdb|1BBP|C Chain C, Bilin Binding Protein (BBP)
pdb|1BBP|B Chain B, Bilin Binding Protein (BBP)
pdb|1BBP|D Chain D, Bilin Binding Protein (BBP)
Length = 173
Score = 25.8 bits (55), Expect = 3.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 89 FFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVTK 121
F + YP G K+ GKIY LT GVTK
Sbjct: 68 FIEGTAYPVGDSKI-----GKIYHKLTYGGVTK 95
>pdb|1DYV|A Chain A, Crystal Structure Of Circularly Permuted Cpdsba_q100t99
Length = 197
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
Query: 89 FFDVVKY---PKGSFKMTKYEDGKIYGDLTLRGVTKPVVLE 126
+ D VKY KG +YEDGK Y L P VLE
Sbjct: 79 YADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQVLE 119
>pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
243545
pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
239629
Length = 420
Score = 25.0 bits (53), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGK 160
+P+VL + +P K E VLQ E ++++ GI K
Sbjct: 66 RPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISK 105
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 109 KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRK 154
K+ + ++ KP +L KI+ + P+N V+ +GK K
Sbjct: 179 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYK 224
>pdb|1GW5|M Chain M, Ap2 Clathrin Adaptor Core
Length = 435
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 109 KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRK 154
K+ + ++ KP +L KI+ + P+N V+ +GK K
Sbjct: 300 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYK 345
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 109 KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRK 154
K+ + ++ KP +L KI+ + P+N V+ +GK K
Sbjct: 186 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYK 231
>pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35
pdb|1P35|A Chain A, Crystal Structure Of Baculovirus P35
pdb|1P35|C Chain C, Crystal Structure Of Baculovirus P35
Length = 299
Score = 24.3 bits (51), Expect = 8.9
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 119 VTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVG--DEVK 172
+TKPV++ I P+++ K + + + K++ + + + +SD + G D +K
Sbjct: 38 LTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIK 93
>pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 COMPLEX
Length = 300
Score = 24.3 bits (51), Expect = 8.9
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 119 VTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVG--DEVK 172
+TKPV++ I P+++ K + + + K++ + + + +SD + G D +K
Sbjct: 40 LTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIK 95
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 109 KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRK 154
K+ + ++ KP +L KI+ + P+N V+ +GK K
Sbjct: 153 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYK 198
>pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
Length = 285
Score = 24.3 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 109 KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRK 154
K+ + ++ KP +L KI+ + P+N V+ +GK K
Sbjct: 150 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYK 195
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,059,328
Number of Sequences: 13198
Number of extensions: 43349
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 2,899,336
effective HSP length: 83
effective length of query: 99
effective length of database: 1,803,902
effective search space: 178586298
effective search space used: 178586298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)