BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645901|ref|NP_208080.1| hypothetical protein
[Helicobacter pylori 26695]
(132 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DX0|A Chain A, Bovine Prion Protein Residues 23-230 >g... 32 0.032
pdb|1QLX|A Chain A, Human Prion Protein >gi|6730487|pdb|1QL... 30 0.070
pdb|1QVC|A Chain A, Crystal Structure Analysis Of Single St... 27 0.60
pdb|1KAW|A Chain A, Structure Of Single Stranded Dna Bindin... 27 0.60
pdb|1HPL|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol H... 27 0.78
pdb|1PCI|A Chain A, Procaricain >gi|2098465|pdb|1PCI|B Chai... 27 1.0
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 27 1.0
pdb|1LPB|B Chain B, Lipase (E.C.3.1.1.3) Complexed With Col... 26 1.3
pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Am... 26 1.7
pdb|1SRP| Serratia Protease (E.C.3.4.24.40) (Serralysin) ... 26 1.7
pdb|1SAT| Molecule: Serratia Protease Synonym: Serralysin... 26 1.7
pdb|1SMP|A Chain A, Mol_id: 1; Molecule: Serratia Metallo P... 26 1.7
pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhib... 26 1.7
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human... 25 2.3
pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Amp... 25 2.3
pdb|1K3V|A Chain A, Porcine Parvovirus Capsid 25 2.3
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Amp... 25 2.3
pdb|1H2S|A Chain A, Molecular Basis Of Transmenbrane Signal... 25 3.0
pdb|1JGJ|A Chain A, Crystal Structure Of Sensory Rhodopsin ... 25 3.0
pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment An... 25 3.0
pdb|1H68|A Chain A, Sensory Rhodopsin Ii >gi|20663741|pdb|1... 25 3.0
pdb|1GEC|E Chain E, Glycyl Endopeptidase - Complex With Ben... 25 3.9
pdb|1QOK|A Chain A, Mfe-23 An Anti-Carcinoembryonic Antigen... 24 5.0
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-Glucuronyl... 24 5.0
pdb|1GPL| Rp2 Lipase 24 6.6
pdb|1HJD|A Chain A, Melanoma Inhibitory Activity (Mia) Protein 24 6.6
pdb|1K0X|A Chain A, Solution Structure Of Melanoma Inhibito... 24 6.6
pdb|1QM0|A Chain A, Human Prion Protein Fragment 90-230 >gi... 23 8.6
pdb|1B10|A Chain A, Solution Nmr Structure Of Recombinant S... 23 8.6
pdb|1PPO| Protease Omega (E.C.3.4.22.30) (Cys 25 With Bou... 23 8.6
pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), ... 23 8.6
pdb|1FKC|A Chain A, Human Prion Protein (Mutant E200k) Frag... 23 8.6
>pdb|1DX0|A Chain A, Bovine Prion Protein Residues 23-230
pdb|1DX1|A Chain A, Bovine Prion Protein Residues 23-230
Length = 219
Score = 31.6 bits (70), Expect = 0.032
Identities = 18/41 (43%), Positives = 20/41 (47%)
Query: 58 GGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFG 98
GG G GGG G GG G P GG G+ GG G+ G
Sbjct: 35 GGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 75
Score = 30.8 bits (68), Expect = 0.054
Identities = 18/41 (43%), Positives = 21/41 (50%)
Query: 51 GEFGRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGG 91
G +G+ GG G GGG G GG G P GG G+ GG
Sbjct: 36 GGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG 76
Score = 24.6 bits (52), Expect = 3.9
Identities = 17/42 (40%), Positives = 19/42 (44%), Gaps = 5/42 (11%)
Query: 54 GRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSVGR 95
G WG GG G GG G GG GGW GG+ G+
Sbjct: 51 GGGWGQPHGGGWGQPHGGGWGQPHGG--GGWG---QGGTHGQ 87
Score = 24.3 bits (51), Expect = 5.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 51 GEFGRFWGGAVGGAIGGGVG---GAVGGAVGGPAGGW 84
G +G+ GG G GGG G G G GG G W
Sbjct: 52 GGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
Score = 23.5 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 58 GGAVGGAIGGGVGG-AVGGAVGGP 80
G A GA+ GG+GG +G A+ P
Sbjct: 103 GAAAAGAVVGGLGGYMLGSAMSRP 126
>pdb|1QLX|A Chain A, Human Prion Protein
pdb|1QLZ|A Chain A, Human Prion Protein
Length = 210
Score = 30.4 bits (67), Expect = 0.070
Identities = 18/41 (43%), Positives = 20/41 (47%)
Query: 58 GGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFG 98
GG G GGG G GG G P GG G+ GG G+ G
Sbjct: 34 GGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGG 74
Score = 28.9 bits (63), Expect = 0.20
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 51 GEFGRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFGR 99
G +G+ GG G GGG G GG G P GG G+ GG ++ +
Sbjct: 35 GGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ--GGGTHSQWNK 81
Score = 23.5 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 58 GGAVGGAIGGGVGG-AVGGAVGGP 80
G A GA+ GG+GG +G A+ P
Sbjct: 94 GAAAAGAVVGGLGGYMLGSAMSRP 117
>pdb|1QVC|A Chain A, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|B Chain B, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|C Chain C, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|D Chain D, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
Length = 145
Score = 27.3 bits (59), Expect = 0.60
Identities = 14/26 (53%), Positives = 16/26 (60%), Gaps = 4/26 (15%)
Query: 61 VGGAIGGGV--GGAVGGAVGGPAGGW 84
+GG GGG GG +GG G P GGW
Sbjct: 112 LGGRQGGGAPAGGNIGG--GQPQGGW 135
>pdb|1KAW|A Chain A, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|B Chain B, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|C Chain C, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|D Chain D, Structure Of Single Stranded Dna Binding Protein (Ssb)
Length = 135
Score = 27.3 bits (59), Expect = 0.60
Identities = 14/26 (53%), Positives = 16/26 (60%), Gaps = 4/26 (15%)
Query: 61 VGGAIGGGV--GGAVGGAVGGPAGGW 84
+GG GGG GG +GG G P GGW
Sbjct: 112 LGGRQGGGAPAGGNIGG--GQPQGGW 135
>pdb|1HPL|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1HPL|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
Length = 449
Score = 26.9 bits (58), Expect = 0.78
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 73 VGGAVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDREPQAPREPTYDRHFV 129
+G ++G A G AGR G+VGR G D E +G P+ R D FV
Sbjct: 150 IGHSLGSHAAGEAGRRTNGAVGRITGL---DPAEPCFQGT---PELVRLDPSDAQFV 200
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 26.6 bits (57), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Query: 47 IEARGE-FGRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFGRE 100
+E++G F + GG G G V GAV G +GG L+ S G +G +
Sbjct: 240 VESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 26.6 bits (57), Expect = 1.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 54 GRFWGGAVGGAIGGGVGGAVGGAVGG 79
G WGG G GGG G + GG+ G
Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTG 78
Score = 24.3 bits (51), Expect = 5.0
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 44 GPKIEARGEFGRFWGGAVGGAIGGGVGGAVG-GAVGGPAGGWAGRLV--GGSVGREFG 98
G A G GG G +GGG G + P GG +G + GG G G
Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65
Score = 24.3 bits (51), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 3/38 (7%)
Query: 57 WGGAVG-GAIGGGVGGAVGGAVGGPAGGWAGRLVGGSV 93
WGG G G GG G G G +GG +G GG++
Sbjct: 46 WGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG--TGGNL 81
>pdb|1LPB|B Chain B, Lipase (E.C.3.1.1.3) Complexed With Colipase And Inhibited
By Undecane Phosphonate Methyl Ester (Two Conformations)
pdb|1LPA|B Chain B, Lipase (E.C.3.1.1.3) Complexed With Colipase And
Phospholipid
Length = 449
Score = 26.2 bits (56), Expect = 1.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 73 VGGAVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDREPQAPREPTYDRHFV 129
+G ++G A G AGR G++GR G D E +G P+ R D FV
Sbjct: 150 IGHSLGAHAAGEAGRRTNGTIGRITGL---DPAEPCFQGT---PELVRLDPSDAKFV 200
>pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Amylomaltase From
Thermus Aquaticus. Implications For The Synthesis Of
Large Cyclic Glucans
pdb|1CWY|A Chain A, Crystal Structure Of Amylomaltase From Thermus Aquaticus,
A Glycosyltransferase Catalysing The Production Of Large
Cyclic Glucans
Length = 500
Score = 25.8 bits (55), Expect = 1.7
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 78 GGPAGGWAGRLVGGSVGREFGREI 101
G P+G WA RL+ G + E G +
Sbjct: 467 GRPSGNWAWRLLPGELSPEHGARL 490
>pdb|1SRP| Serratia Protease (E.C.3.4.24.40) (Serralysin) Complexed With Zinc
Length = 471
Score = 25.8 bits (55), Expect = 1.7
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 9 QFLNLNFMKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGG 68
Q +NLN + GLK V + G AI G + G A + GG
Sbjct: 301 QRINLNEKSFSDVGGLKGN--VSIAAGVTIENAIGGSGNDV------IVGNAANNVLKGG 352
Query: 69 VGGAVGGAVGGPAGGWAGR---LVGGSVGREFGREIGDRVEDYIRGVDR 114
G V GG W G + S + D + D+ +G+D+
Sbjct: 353 AGNDVLFGGGGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDK 401
>pdb|1SAT| Molecule: Serratia Protease Synonym: Serralysin, Major Metallo
Protease From Serratia Marcescens
Length = 471
Score = 25.8 bits (55), Expect = 1.7
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 9 QFLNLNFMKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGG 68
Q +NLN + GLK V + G AI G + G A + GG
Sbjct: 301 QRINLNEKSFSDVGGLKGN--VSIAAGVTIENAIGGSGNDV------IVGNAANNVLKGG 352
Query: 69 VGGAVGGAVGGPAGGWAGR---LVGGSVGREFGREIGDRVEDYIRGVDR 114
G V GG W G + S + D + D+ +G+D+
Sbjct: 353 AGNDVLFGGGGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDK 401
>pdb|1SMP|A Chain A, Mol_id: 1; Molecule: Serratia Metallo Proteinase; Chain:
A; Ec: 3.4.24.40; Mol_id: 2; Molecule: Erwinia
Chrysanthemi Inhibitor; Chain: I; Engineered: Yes
Length = 471
Score = 25.8 bits (55), Expect = 1.7
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 9 QFLNLNFMKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGG 68
Q +NLN + GLK V + G AI G + G A + GG
Sbjct: 301 QRINLNEKSFSDVGGLKGN--VSIAAGVTIENAIGGSGNDV------IVGNAANNVLKGG 352
Query: 69 VGGAVGGAVGGPAGGWAGR---LVGGSVGREFGREIGDRVEDYIRGVDR 114
G V GG W G + S + D + D+ +G+D+
Sbjct: 353 AGNDVLFGGGGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDK 401
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 25.8 bits (55), Expect = 1.7
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 9 QFLNLNFMKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGG 68
Q +NLN + GLK V + G AI G + G A + GG
Sbjct: 301 QRINLNEKSFSDVGGLKGN--VSIAAGVTIENAIGGSGNDV------IVGNAANNVLKGG 352
Query: 69 VGGAVGGAVGGPAGGWAGR---LVGGSVGREFGREIGDRVEDYIRGVDR 114
G V GG W G + S + D + D+ +G+D+
Sbjct: 353 AGNDVLFGGGGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDK 401
>pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 25.4 bits (54), Expect = 2.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 63 GAIGGGVGGAVGGAVGGPA 81
GA GG G GGA GGPA
Sbjct: 8 GAGGGYYPGGYGGAPGGPA 26
Score = 24.3 bits (51), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 59 GAVGGAIGGGVGGAVGG 75
GA GG GG GGA GG
Sbjct: 8 GAGGGYYPGGYGGAPGG 24
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 25.4 bits (54), Expect = 2.3
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 4/35 (11%)
Query: 43 AGPKIEARGEFGRFWGGAVGGAIGGGVGGAVGGAV 77
AG K+E + R GG+ GG GGG G G V
Sbjct: 103 AGTKLELK----RGGGGSGGGGSGGGGSGGGGSQV 133
Score = 23.5 bits (49), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 66 GGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFGR 99
GGG GG GG+ GG +GG ++ G E R
Sbjct: 113 GGGSGG--GGSGGGGSGGGGSQVQLQESGGELVR 144
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 25.4 bits (54), Expect = 2.3
Identities = 14/36 (38%), Positives = 17/36 (46%)
Query: 39 NTAIAGPKIEARGEFGRFWGGAVGGAIGGGVGGAVG 74
N AG ++ A G GG GG GGVG + G
Sbjct: 9 NPINAGTELSATGNESGGGGGGGGGRGAGGVGVSTG 44
>pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment
Length = 252
Score = 25.4 bits (54), Expect = 2.3
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 4/35 (11%)
Query: 43 AGPKIEARGEFGRFWGGAVGGAIGGGVGGAVGGAV 77
AG K+E + R GG+ GG GGG G G V
Sbjct: 103 AGTKLELK----RGGGGSGGGGSGGGGSGGGGSQV 133
Score = 23.5 bits (49), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 66 GGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFGR 99
GGG GG GG+ GG +GG ++ G E R
Sbjct: 113 GGGSGG--GGSGGGGSGGGGSQVQLQEPGGELVR 144
>pdb|1H2S|A Chain A, Molecular Basis Of Transmenbrane Signalling By Sensory
Rhodopsin Ii-Transducer Complex
Length = 225
Score = 25.0 bits (53), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 71 GAVGGAVGGPAGGWAGRLVGGSVGREFGREIG 102
GA+G VG A WAGR G R + +G
Sbjct: 11 GAIGMLVGTLAFAWAGRDAGSGERRYYVTLVG 42
>pdb|1JGJ|A Chain A, Crystal Structure Of Sensory Rhodopsin Ii At 2.4
Angstroms: Insights Into Color Tuning And Transducer
Interaction
Length = 217
Score = 25.0 bits (53), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 71 GAVGGAVGGPAGGWAGRLVGGSVGREFGREIG 102
GA+G VG A WAGR G R + +G
Sbjct: 11 GAIGMLVGTLAFAWAGRDAGSGERRYYVTLVG 42
>pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment And An Analogue Of
The Main Immunogenic Region Of The Acetylcholine
Receptor
Length = 257
Score = 25.0 bits (53), Expect = 3.0
Identities = 10/24 (41%), Positives = 12/24 (49%)
Query: 56 FWGGAVGGAIGGGVGGAVGGAVGG 79
FWG + G GG+ GG GG
Sbjct: 112 FWGPGTMVTVSSGGGGSGGGGSGG 135
>pdb|1H68|A Chain A, Sensory Rhodopsin Ii
pdb|1GUE|A Chain A, Sensory Rhodopsin Ii
pdb|1GU8|A Chain A, Sensory Rhodopsin Ii
pdb|1GU8|B Chain B, Sensory Rhodopsin Ii
Length = 239
Score = 25.0 bits (53), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 71 GAVGGAVGGPAGGWAGRLVGGSVGREFGREIG 102
GA+G VG A WAGR G R + +G
Sbjct: 11 GAIGMLVGTLAFAWAGRDAGSGERRYYVTLVG 42
>pdb|1GEC|E Chain E, Glycyl Endopeptidase - Complex With Benzyloxycarbonyl-
Leucine-Valine-Glycine-Methylene Covalently Bound To
Cysteine 25
Length = 216
Score = 24.6 bits (52), Expect = 3.9
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 33 LCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGS 92
L A+A+ ++ A +F + GG G+ G V AV G +GG L+ S
Sbjct: 121 LLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKNS 180
Query: 93 VGREFG 98
G +G
Sbjct: 181 WGPGWG 186
>pdb|1QOK|A Chain A, Mfe-23 An Anti-Carcinoembryonic Antigen Single-Chain Fv
Antibody
Length = 282
Score = 24.3 bits (51), Expect = 5.0
Identities = 9/24 (37%), Positives = 12/24 (49%)
Query: 56 FWGGAVGGAIGGGVGGAVGGAVGG 79
+WG + G GG+ GG GG
Sbjct: 135 YWGQGTTVTVSSGGGGSGGGGSGG 158
>pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-Glucuronyltransferase I In
Complex With The Active Udp-Glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-Glucuronyltransferase I In
Complex With The Active Udp-Glcua Donor
pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
Length = 261
Score = 24.3 bits (51), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 68 GVGGAVGGAVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDREP 116
G GGAVGG P G G + + RE+ + + + RGV P
Sbjct: 96 GRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMR-WTRGVSVWP 143
>pdb|1GPL| Rp2 Lipase
Length = 432
Score = 23.9 bits (50), Expect = 6.6
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 3/43 (6%)
Query: 73 VGGAVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDRE 115
+G ++G G AG+ + G VGR G D E Y + E
Sbjct: 151 IGHSLGAHTAGEAGKRLNGLVGRITGL---DPAEPYFQDTPEE 190
>pdb|1HJD|A Chain A, Melanoma Inhibitory Activity (Mia) Protein
Length = 101
Score = 23.9 bits (50), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Query: 46 KIEARGEFGRFWGGAVGGAIGGGVGGAVG 74
K++ RG FWGG+V G G + +G
Sbjct: 45 KLKGRGRL--FWGGSVQGDYYGDLAARLG 71
>pdb|1K0X|A Chain A, Solution Structure Of Melanoma Inhibitory Activity
Protein
pdb|1I1J|A Chain A, Structure Of Melanoma Inhibitory Activity Protein: A
Member Of A New Family Of Secreted Proteins
pdb|1I1J|B Chain B, Structure Of Melanoma Inhibitory Activity Protein: A
Member Of A New Family Of Secreted Proteins
Length = 108
Score = 23.9 bits (50), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Query: 46 KIEARGEFGRFWGGAVGGAIGGGVGGAVG 74
K++ RG FWGG+V G G + +G
Sbjct: 52 KLKGRGRL--FWGGSVQGDYYGDLAARLG 78
>pdb|1QM0|A Chain A, Human Prion Protein Fragment 90-230
pdb|1QM1|A Chain A, Human Prion Protein Fragment 90-230
Length = 143
Score = 23.5 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 58 GGAVGGAIGGGVGG-AVGGAVGGP 80
G A GA+ GG+GG +G A+ P
Sbjct: 27 GAAAAGAVVGGLGGYMLGSAMSRP 50
>pdb|1B10|A Chain A, Solution Nmr Structure Of Recombinant Syrian Hamster
Prion Protein Rprp(90-231) , 25 Structures
Length = 142
Score = 23.5 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 58 GGAVGGAIGGGVGG-AVGGAVGGP 80
G A GA+ GG+GG +G A+ P
Sbjct: 25 GAAAAGAVVGGLGGYMLGSAMSRP 48
>pdb|1PPO| Protease Omega (E.C.3.4.22.30) (Cys 25 With Bound Mercury)
Length = 216
Score = 23.5 bits (49), Expect = 8.6
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 1/55 (1%)
Query: 47 IEARGE-FGRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSVGREFGRE 100
+E++G F + GG G G V AV G +GG L+ S G +G +
Sbjct: 134 VESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEK 188
>pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), VP2, PH7.5, T4
Degrees C
Length = 587
Score = 23.5 bits (49), Expect = 8.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 60 AVGGAIGGGVGGAVGGAVGGPAGGW 84
A G G G GG+ GG VG G +
Sbjct: 23 AADGPGGSGGGGSGGGGVGVSTGSY 47
>pdb|1FKC|A Chain A, Human Prion Protein (Mutant E200k) Fragment 90-231
pdb|1FO7|A Chain A, Human Prion Protein Mutant E200k Fragment 90-231
Length = 142
Score = 23.5 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 58 GGAVGGAIGGGVGG-AVGGAVGGP 80
G A GA+ GG+GG +G A+ P
Sbjct: 25 GAAAAGAVVGGLGGYMLGSAMSRP 48
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.146 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 888,463
Number of Sequences: 13198
Number of extensions: 41204
Number of successful extensions: 190
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 68
length of query: 132
length of database: 2,899,336
effective HSP length: 78
effective length of query: 54
effective length of database: 1,869,892
effective search space: 100974168
effective search space used: 100974168
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)