BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645902|ref|NP_208081.1| hypothetical protein
[Helicobacter pylori 26695]
         (161 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1F8V|A  Chain A, The Structure Of Pariacoto Virus Reveal...    24  9.6

>pdb|1F8V|A Chain A, The Structure Of Pariacoto Virus Reveals A Dodecahedral
           Cage Of Duplex Rna
 pdb|1F8V|B Chain B, The Structure Of Pariacoto Virus Reveals A Dodecahedral
           Cage Of Duplex Rna
 pdb|1F8V|C Chain C, The Structure Of Pariacoto Virus Reveals A Dodecahedral
           Cage Of Duplex Rna
          Length = 355

 Score = 23.9 bits (50), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 66  FDPRGRDCYKSFQVRYP 82
           FDP   +CY + ++R+P
Sbjct: 331 FDPLALECYHNLKMRFP 347



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.332    0.146    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 951,124
Number of Sequences: 13198
Number of extensions: 35972
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 1
length of query: 161
length of database: 2,899,336
effective HSP length: 81
effective length of query: 80
effective length of database: 1,830,298
effective search space: 146423840
effective search space used: 146423840
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)