BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645907|ref|NP_208086.1| ribosomal protein S4 (rps4)
[Helicobacter pylori 26695]
(208 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 3... 208 4e-55
pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 3... 207 5e-55
pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 3... 206 2e-54
pdb|1EG0|A Chain A, Fitting Of Components With Known Struct... 165 4e-42
pdb|1DM9|B Chain B, Heat Shock Protein 15 Kd >gi|7245731|pd... 32 0.070
pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase T... 27 2.2
pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopat... 26 2.9
pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Str... 25 5.0
pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35 >g... 25 5.0
pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 C... 25 5.0
pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Str... 25 5.0
pdb|1GBB|A Chain A, Alpha-Lytic Protease With Met 190 Repla... 25 8.5
pdb|1QQ4|A Chain A, Crystal Structure Of An Alpha-Lytic Pro... 25 8.5
pdb|1BOQ|A Chain A, Pro Region C-Terminus: Protease Active ... 25 8.5
pdb|3PRO|A Chain A, Alpha-Lytic Protease Complexed With C-T... 25 8.5
pdb|1TAL| Alpha-Lytic Protease At 120 K (Single Structure... 25 8.5
pdb|1GBJ|A Chain A, Alpha-Lytic Protease With Met 190 Repla... 25 8.5
pdb|1GBF|A Chain A, Alpha-Lytic Protease With Met 190 Repla... 25 8.5
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In... 25 8.5
>pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1HR0|D Chain D, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1JGQ|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|G Chain G, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 209
Score = 208 bits (529), Expect = 4e-55
Identities = 102/209 (48%), Positives = 148/209 (70%), Gaps = 1/209 (0%)
Query: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRRAKT-SDYGLQLKE 59
M RY G V RL RR GV L LKGER S K A+++R Y PGQHGQ+RA+ SDY ++L+E
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60
Query: 60 KQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQL 119
KQK + +YGISE+QFR++F EA++ G TG + L+E RLDNVVYR+GFA +R ARQL
Sbjct: 61 KQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQL 120
Query: 120 VTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQTGIVPWIDVEKDK 179
V HGH+ V+G+R+D+PSY VR G +I + EK+++ + + +E + PW+ ++ +
Sbjct: 121 VRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEG 180
Query: 180 KYGIFTRYPEREEVVVPIEERLIVELYSK 208
G F R P+RE++ +P++E L++E YS+
Sbjct: 181 MKGKFLRLPDREDLALPVQENLVIEFYSR 209
>pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HNZ|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
Length = 209
Score = 207 bits (528), Expect = 5e-55
Identities = 102/209 (48%), Positives = 148/209 (70%), Gaps = 1/209 (0%)
Query: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRRAKT-SDYGLQLKE 59
M RY G V RL RR GV L LKGER S K A+++R Y PGQHGQ+RA+ SDY ++L+E
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60
Query: 60 KQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQL 119
KQK + +YGISE+QFR++F EA++ G TG + L+E RLDNVVYR+GFA +R ARQL
Sbjct: 61 KQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQL 120
Query: 120 VTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQTGIVPWIDVEKDK 179
V HGH+ V+G+R+D+PSY VR G +I + EK+++ + + +E + PW+ ++ +
Sbjct: 121 VRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEG 180
Query: 180 KYGIFTRYPEREEVVVPIEERLIVELYSK 208
G F R P+RE++ +P+ E+L++E YS+
Sbjct: 181 MKGKFLRLPDREDLALPVNEQLVIEFYSR 209
>pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 208
Score = 206 bits (523), Expect = 2e-54
Identities = 101/207 (48%), Positives = 147/207 (70%), Gaps = 1/207 (0%)
Query: 3 RYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRRAKT-SDYGLQLKEKQ 61
RY G V RL RR GV L LKGER S K A+++R Y PGQHGQ+RA+ SDY ++L+EKQ
Sbjct: 2 RYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQ 61
Query: 62 KAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQLVT 121
K + +YGISE+QFR++F EA++ G TG + L+E RLDNVVYR+GFA +R ARQLV
Sbjct: 62 KLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVR 121
Query: 122 HGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQTGIVPWIDVEKDKKY 181
HGH+ V+G+R+D+PSY VR G +I + EK+++ + + +E + PW+ ++ +
Sbjct: 122 HGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMK 181
Query: 182 GIFTRYPEREEVVVPIEERLIVELYSK 208
G F R P+RE++ +P+ E+L++E YS+
Sbjct: 182 GKFLRLPDREDLALPVNEQLVIEFYSR 208
>pdb|1EG0|A Chain A, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|1C05|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41,
Refined With Dipolar Couplings (Minimized Average
Structure
pdb|1C06|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41,
Refined With Dipolar Couplings (Ensemble Of 16
Structures)
pdb|1QD7|C Chain C, Partial Model For 30s Ribosomal Subunit
Length = 159
Score = 165 bits (417), Expect = 4e-42
Identities = 84/160 (52%), Positives = 113/160 (70%), Gaps = 2/160 (1%)
Query: 49 KTSDYGLQLKEKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMG 108
K S+YGLQL+EKQK + MYG++E+QFR F EA ++ G GEN + L+E RLDN+VYR+G
Sbjct: 2 KLSEYGLQLQEKQKLRHMYGVNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLG 61
Query: 109 FATTRSSARQLVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQTG 168
A TR ARQLVTHGH+LVDG R++IPSY V+ GQ I ++EK++ N QV++ L A
Sbjct: 62 LARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSR-NLQVIKE-ALEANNY 119
Query: 169 IVPWIDVEKDKKYGIFTRYPEREEVVVPIEERLIVELYSK 208
I ++ + +K G +TR PER E+ I E LIVE YS+
Sbjct: 120 IPDYLSFDPEKMEGTYTRLPERSELPAEINEALIVEFYSR 159
>pdb|1DM9|B Chain B, Heat Shock Protein 15 Kd
pdb|1DM9|A Chain A, Heat Shock Protein 15 Kd
Length = 133
Score = 31.6 bits (70), Expect = 0.070
Identities = 18/66 (27%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Query: 96 IERRLDNVVYRMGFATTRSSARQLVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNS 155
+E RLD ++ F TR+ AR+++ G V +G+R PS V + +++ +
Sbjct: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERT 65
Query: 156 QVVRAM 161
+V+A+
Sbjct: 66 VIVKAI 71
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 26.6 bits (57), Expect = 2.2
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 6/49 (12%)
Query: 130 KRLDIPSY----FVRSGQKIEIKEKTKSN--SQVVRAMELTAQTGIVPW 172
K D+P++ F+ GQK+ + E++K N ++ R +E AQ I+ +
Sbjct: 231 KAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDY 279
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 26.2 bits (56), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 108 GFATTRSSARQLVTHGHVLVDGKRLDIPS 136
G AT SS + +V +G + GK+LD+ S
Sbjct: 10 GLATAVSSCKNIVLNGFQVPTGKQLDLSS 38
>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 25.4 bits (54), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 132 LDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQT 167
L +PS F S + + E +K+ S + +A+E T ++
Sbjct: 216 LILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTES 251
>pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35
pdb|1P35|A Chain A, Crystal Structure Of Baculovirus P35
pdb|1P35|C Chain C, Crystal Structure Of Baculovirus P35
Length = 299
Score = 25.4 bits (54), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 132 LDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQT 167
L +PS F S + + E +K+ S + +A+E T ++
Sbjct: 216 LILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTES 251
>pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 COMPLEX
Length = 300
Score = 25.4 bits (54), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 132 LDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQT 167
L +PS F S + + E +K+ S + +A+E T ++
Sbjct: 218 LILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTES 253
>pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|A Chain A, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|B Chain B, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 25.4 bits (54), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 132 LDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQT 167
L +PS F S + + E +K+ S + +A+E T ++
Sbjct: 216 LILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTES 251
>pdb|1GBB|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala Complex With
Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1GBA|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala
pdb|1GBC|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala Complex With
Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|1GBD|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala Complex With
Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic Acid
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|1QQ4|A Chain A, Crystal Structure Of An Alpha-Lytic Protease Mutant With
Accelerated Folding Kinetics, R102hG134S
pdb|1QRW|A Chain A, Crystal Structure Of An Alpha-Lytic Protease Mutant With
Accelerated Folding Kinetics, R102hG134S, PH 8
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|1BOQ|A Chain A, Pro Region C-Terminus: Protease Active Site Interactions
Are Critical In Catalyzing The Folding Of Alpha-Lytic
Protease
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|3PRO|A Chain A, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|3PRO|B Chain B, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|7LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 213
Replaced By Ala) (M213A) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|6LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 213
Replaced By Ala) (M213A) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Norleucine Boronic Acid
pdb|5LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 213
Replaced By Ala) (M213A) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1P09|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 213
Replaced By Ala) (M213A)
pdb|1P10|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 213
Replaced By Ala) (M213A) Complex With Methoxysuccinyl-
Ala-Ala-Pro-Valine Boronic Acid
pdb|8LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 213
Replaced By Ala) (M213A) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic Acid
pdb|4PRO|B Chain B, Alpha-Lytic Protease Complexed With Pro Region
pdb|4PRO|A Chain A, Alpha-Lytic Protease Complexed With Pro Region
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|1TAL| Alpha-Lytic Protease At 120 K (Single Structure Model)
pdb|2ULL| Multiple Conformation Structure Of Alpha-Lytic Protease At 120 K
pdb|1QRX|A Chain A, Crystal Structure Of Wild-Type Alpha-Lytic Protease At 1.6
A, Ph 5.14
pdb|2ALP| Alpha-Lytic Protease (E.C.3.4.21.12)
pdb|1P12|E Chain E, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
N-[(2s)-2-(Phenoxy(1-R-(N-T-Butyloxycarbonyl-L-Alanyl-
L-Prolyl)-1-Amino-2-Methylpropyl)phosphinyloxy)-
Propanoyl] -L-Alanine Methyl Ester
pdb|1P11|E Chain E, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
N-[(2s)-2-(Phenoxy(1-R-(N-T-Butyloxycarbonyl-L-Alanyl-
L-Prolyl)-1-Amino-2-Methylpropyl)phosphinyloxy)-
Propanoyl] -L-Alanine Methyl Ester
pdb|1P01|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Boc-Ala-Pro-Valine Boronic Acid
pdb|1P02|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1P05|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Norleucine Boronic Acid
pdb|1P03|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Valine Boronic Acid
pdb|9LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|1P06|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic Acid
pdb|1P04|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Isoleucine Boronic Acid
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|1GBJ|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala
pdb|1GBK|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala Complex
With Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1GBL|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala Complex
With Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|3LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 192
Replaced By Ala) (M192A) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Norleucine Boronic Acid
pdb|2LPR|A Chain A, Alpha-Lytic Protease (E.C.3.4.21.12) (Mutant With Met 192
Replaced By Ala) (M192A) Complex With
Methoxysuccinyl-Ala-Ala-Pro-Valine Boronic Acid
pdb|1GBM|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala Complex
With Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic
Acid
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|1GBF|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu Complex With
Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1GBH|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu Complex With
Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|1GBI|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu Complex With
Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic Acid
pdb|1GBE|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu
Length = 198
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 91 NLIRLIERRLDNV-VYRMGFATTRSSARQLVTHGH 124
N++ IE ++N + +GF+ TR + + VT GH
Sbjct: 2 NIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGH 36
>pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
243545
pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
239629
Length = 420
Score = 24.6 bits (52), Expect = 8.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 103 VVYRMGFATTRSSARQLVTHGHVLVDGKRLDIPSYFVRSGQKIE 146
V+ G + ++ AR+ V +G + ++G+R +Y + KI+
Sbjct: 358 VLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKID 401
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,121,564
Number of Sequences: 13198
Number of extensions: 41084
Number of successful extensions: 118
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 19
length of query: 208
length of database: 2,899,336
effective HSP length: 84
effective length of query: 124
effective length of database: 1,790,704
effective search space: 222047296
effective search space used: 222047296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)