BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645910|ref|NP_208089.1| ribosomal protein L36
(rpl36) [Helicobacter pylori 26695]
         (37 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1LNR|4  Chain 4, Crystal Structure Of The Large Ribosoma...    62  2e-11
pdb|1DFE|A  Chain A, Nmr Structure Of Ribosomal Protein L36 ...    60  7e-11

>pdb|1LNR|4 Chain 4, Crystal Structure Of The Large Ribosomal Subunit From
          Deinococcus Radiodurans
          Length = 37

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 1  MKVRPSVKKMCDNCKIIKRRGVIRVICATPKHKQRQG 37
          MKVR SVKKMCDNCK+++R G + VIC+  KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICSNVKHKQRQG 37



>pdb|1DFE|A Chain A, Nmr Structure Of Ribosomal Protein L36 From Thermus
          Thermophilus
 pdb|1DGZ|A Chain A, Ribosmal Protein L36 From Thermus Thermophilus: Nmr
          Structure Ensemble
          Length = 37

 Score = 59.7 bits (143), Expect = 7e-11
 Identities = 25/37 (67%), Positives = 30/37 (80%)

Query: 1  MKVRPSVKKMCDNCKIIKRRGVIRVICATPKHKQRQG 37
          MKVR SVK++CD CK+I+R G + VIC  PKHKQRQG
Sbjct: 1  MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG 37



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.329    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,254
Number of Sequences: 13198
Number of extensions: 3236
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 37
length of database: 2,899,336
effective HSP length: 13
effective length of query: 24
effective length of database: 2,727,762
effective search space: 65466288
effective search space used: 65466288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)