BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645912|ref|NP_208091.1| methionine amino peptidase
(map) [Helicobacter pylori 26695]
(253 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18) 187 1e-48
pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9... 186 2e-48
pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transi... 186 2e-48
pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79a... 186 2e-48
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trif... 184 7e-48
pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminope... 182 3e-47
pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthe... 110 1e-25
pdb|1A16| Aminopeptidase P From E. Coli With The Inhibito... 64 2e-11
pdb|1JAW| Aminopeptidase P From E. Coli Low Ph Form 64 2e-11
pdb|1AZ9| Aminopeptidase P From E. Coli 64 2e-11
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 49 4e-07
pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptid... 49 4e-07
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 49 6e-07
pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creat... 39 8e-04
pdb|1CHM|B Chain B, Creatine Amidinohydrolase (E.C.3.5.3.3) 33 0.032
pdb|1CHM|A Chain A, Creatine Amidinohydrolase (E.C.3.5.3.3) 33 0.032
pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear R... 26 5.1
pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nuc... 26 5.1
>pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18)
Length = 264
Score = 187 bits (474), Expect = 1e-48
Identities = 98/255 (38%), Positives = 159/255 (61%), Gaps = 6/255 (2%)
Query: 1 MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFK 59
MAISIK+P++I+ +R AG L A+ L ++E V+PGVS ELD++ D+I HA A
Sbjct: 1 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 60
Query: 60 GLYGFPNSVCMSLNEVVIHGIPTDY-VLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISP 118
G +G+P SVC+S+NEVV HGIP D +L++GDI+ +D+ V DG++GD++ +G +
Sbjct: 61 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI 120
Query: 119 QDEKLLACSKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGKKPHEE 178
E+L ++ESL A+ ++ G++ +E+ ++ + GF ++ +CGHGIG+ HEE
Sbjct: 121 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE 180
Query: 179 PEIPNYLEKGVKPNSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEH 238
P++ +Y + + +K GM F +EPMV + E + + D W+V + D ++ +EH
Sbjct: 181 PQVLHYDSR----ETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEH 236
Query: 239 TIAIVGNKAVILTER 253
TI + N ILT R
Sbjct: 237 TIVVTDNGCEILTLR 251
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
Length = 264
Score = 186 bits (473), Expect = 2e-48
Identities = 98/255 (38%), Positives = 159/255 (61%), Gaps = 6/255 (2%)
Query: 1 MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFK 59
MAISIK+P++I+ +R AG L A+ L ++E V+PGVS ELD++ D+I HA A
Sbjct: 1 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 60
Query: 60 GLYGFPNSVCMSLNEVVIHGIPTDY-VLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISP 118
G +G+P SVC+S+NEVV HGIP D +L++GDI+ +D+ V DG++GD++ +G +
Sbjct: 61 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI 120
Query: 119 QDEKLLACSKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGKKPHEE 178
E+L ++ESL A+ ++ G++ +E+ ++ + GF ++ +CGHGIG+ HEE
Sbjct: 121 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEE 180
Query: 179 PEIPNYLEKGVKPNSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEH 238
P++ +Y + + +K GM F +EPMV + E + + D W+V + D ++ +EH
Sbjct: 181 PQVLHYDSR----ETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEH 236
Query: 239 TIAIVGNKAVILTER 253
TI + N ILT R
Sbjct: 237 TIVVTDNGCEILTLR 251
>pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transition-State
Inhibitor Complex
Length = 265
Score = 186 bits (473), Expect = 2e-48
Identities = 98/255 (38%), Positives = 159/255 (61%), Gaps = 6/255 (2%)
Query: 1 MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFK 59
MAISIK+P++I+ +R AG L A+ L ++E V+PGVS ELD++ D+I HA A
Sbjct: 1 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 60
Query: 60 GLYGFPNSVCMSLNEVVIHGIPTDY-VLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISP 118
G +G+P SVC+S+NEVV HGIP D +L++GDI+ +D+ V DG++GD++ +G +
Sbjct: 61 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI 120
Query: 119 QDEKLLACSKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGKKPHEE 178
E+L ++ESL A+ ++ G++ +E+ ++ + GF ++ +CGHGIG+ HEE
Sbjct: 121 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEE 180
Query: 179 PEIPNYLEKGVKPNSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEH 238
P++ +Y + + +K GM F +EPMV + E + + D W+V + D ++ +EH
Sbjct: 181 PQVLHYDSR----ETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEH 236
Query: 239 TIAIVGNKAVILTER 253
TI + N ILT R
Sbjct: 237 TIVVTDNGCEILTLR 251
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 186 bits (473), Expect = 2e-48
Identities = 98/255 (38%), Positives = 159/255 (61%), Gaps = 6/255 (2%)
Query: 1 MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFK 59
MAISIK+P++I+ +R AG L A+ L ++E V+PGVS ELD++ D+I HA A
Sbjct: 1 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 60
Query: 60 GLYGFPNSVCMSLNEVVIHGIPTDY-VLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISP 118
G +G+P SVC+S+NEVV HGIP D +L++GDI+ +D+ V DG++GD++ +G +
Sbjct: 61 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI 120
Query: 119 QDEKLLACSKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGKKPHEE 178
E+L ++ESL A+ ++ G++ +E+ ++ + GF ++ +CGHGIG+ HEE
Sbjct: 121 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEE 180
Query: 179 PEIPNYLEKGVKPNSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEH 238
P++ +Y + + +K GM F +EPMV + E + + D W+V + D ++ +EH
Sbjct: 181 PQVLHYDSR----ETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEH 236
Query: 239 TIAIVGNKAVILTER 253
TI + N ILT R
Sbjct: 237 TIVVTDNGCEILTLR 251
>pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
Length = 263
Score = 184 bits (468), Expect = 7e-48
Identities = 97/254 (38%), Positives = 158/254 (62%), Gaps = 6/254 (2%)
Query: 2 AISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFKG 60
AISIK+P++I+ +R AG L A+ L ++E V+PGVS ELD++ D+I HA A G
Sbjct: 1 AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLG 60
Query: 61 LYGFPNSVCMSLNEVVIHGIPTDY-VLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQ 119
+G+P SVC+S+NEVV HGIP D +L++GDI+ +D+ V DG++GD++ +G +
Sbjct: 61 YHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIM 120
Query: 120 DEKLLACSKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGKKPHEEP 179
E+L ++ESL A+ ++ G++ +E+ ++ + GF ++ +CGHGIG+ HEEP
Sbjct: 121 GERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEP 180
Query: 180 EIPNYLEKGVKPNSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEHT 239
++ +Y + + +K GM F +EPMV + E + + D W+V + D ++ +EHT
Sbjct: 181 QVLHYDSR----ETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHT 236
Query: 240 IAIVGNKAVILTER 253
I + N ILT R
Sbjct: 237 IVVTDNGCEILTLR 250
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 182 bits (462), Expect = 3e-47
Identities = 90/251 (35%), Positives = 151/251 (59%), Gaps = 5/251 (1%)
Query: 3 ISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLY 62
I IK+P EI+ ++KAG+ A AL + + + PG + +++ + + K +PAFKG
Sbjct: 14 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG 73
Query: 63 GFPNSVCMSLNEVVIHGIPT-DYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDE 121
G+ + C+S+NE V+HG+P + V +EGDI+ +D+G G YGD+A+T +G + +
Sbjct: 74 GYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGK 133
Query: 122 KLLACSKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGKKPHEEPEI 181
+L+ ++E L AI I+ G+ ++S ++ T+ GF ++ + GHG+G++ HE+P+I
Sbjct: 134 ELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQI 193
Query: 182 PNYLEKGVKPNSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEHTIA 241
PNY P +G +++GM +EPMV + + D W+ V+VDG +H EHTI
Sbjct: 194 PNY----GTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTIL 249
Query: 242 IVGNKAVILTE 252
I N A ILT+
Sbjct: 250 ITENGAEILTK 260
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGO| Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 110 bits (276), Expect = 1e-25
Identities = 71/210 (33%), Positives = 112/210 (52%), Gaps = 19/210 (9%)
Query: 10 EIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVC 69
+ + L KAGE+ + + RPG+ LLEL + E I +PAF V
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFP--------VN 53
Query: 70 MSLNEVVIHGIP---TDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLAC 126
+S+NE+ H P VL+EGD + +D+GV +DG+ D+A+T+ +G ++++L+
Sbjct: 54 LSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGM---EEDELMEA 110
Query: 127 SKESLMHAINSIRVGMHFKELSQILESTITERGFVPLKGFCGHGIGK-KPHEEPEIPNYL 185
+KE+L AI+ R G+ KEL + +E+ I +RGF P+ GH I + K H IPN
Sbjct: 111 AKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNI- 169
Query: 186 EKGVKPNSGPKIKEGMVFCLEPMVCQKQGE 215
+P+ +KEG VF +EP G+
Sbjct: 170 ---YRPHDNYVLKEGDVFAIEPFATIGAGQ 196
>pdb|1A16| Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
Length = 440
Score = 63.5 bits (153), Expect = 2e-11
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 6 KSPKEIKALRKAGELTAQALALLEREVRPGVSLLELD-KMAEDFIKSSHARPAFKGLYGF 64
KSP+EI LR+AGE+TA A + RPG+ L+ ++ +F + P++ + G
Sbjct: 176 KSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGS 235
Query: 65 PNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPI-GAISPQDEKL 123
+ C ++H + +++GD++ +D G E GY GD T P+ G + ++
Sbjct: 236 GENGC------ILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREI 289
Query: 124 LACSKESLMHAINSIRVGMHFKELS----QILESTITERGFVPLKGFCGHGIGKKPH 176
ESL ++ R G E++ +I+ S + + G LKG I + H
Sbjct: 290 YDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGI--LKGDVDELIAQNAH 344
>pdb|1JAW| Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 63.5 bits (153), Expect = 2e-11
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 6 KSPKEIKALRKAGELTAQALALLEREVRPGVSLLELD-KMAEDFIKSSHARPAFKGLYGF 64
KSP+EI LR+AGE+TA A + RPG+ L+ ++ +F + P++ + G
Sbjct: 176 KSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGS 235
Query: 65 PNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPI-GAISPQDEKL 123
+ C ++H + +++GD++ +D G E GY GD T P+ G + ++
Sbjct: 236 GENGC------ILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREI 289
Query: 124 LACSKESLMHAINSIRVGMHFKELS----QILESTITERGFVPLKGFCGHGIGKKPH 176
ESL ++ R G E++ +I+ S + + G LKG I + H
Sbjct: 290 YDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGI--LKGDVDELIAQNAH 344
>pdb|1AZ9| Aminopeptidase P From E. Coli
Length = 457
Score = 63.5 bits (153), Expect = 2e-11
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 6 KSPKEIKALRKAGELTAQALALLEREVRPGVSLLELD-KMAEDFIKSSHARPAFKGLYGF 64
KSP+EI LR+AGE+TA A + RPG+ L+ ++ +F + P++ + G
Sbjct: 193 KSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGS 252
Query: 65 PNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPI-GAISPQDEKL 123
+ C ++H + +++GD++ +D G E GY GD T P+ G + ++
Sbjct: 253 GENGC------ILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREI 306
Query: 124 LACSKESLMHAINSIRVGMHFKELS----QILESTITERGFVPLKGFCGHGIGKKPH 176
ESL ++ R G E++ +I+ S + + G LKG I + H
Sbjct: 307 YDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGI--LKGDVDELIAQNAH 361
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 49.3 bits (116), Expect = 4e-07
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 23/205 (11%)
Query: 15 RKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVCMSLNE 74
R+A E Q + ++PG++++E+ + ED + FP SLN
Sbjct: 170 REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGC--SLNN 227
Query: 75 VVIHGIPT---DYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESL 131
H P VLQ DI +D G + G D A T+ +P+ + LL K++
Sbjct: 228 CAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTLLKAVKDAT 284
Query: 132 MHAIN----SIR---VGMHFKELSQILESTITERGF--VPLKGFCGHGIGK-KPHEEPEI 181
I +R VG +E+ + E I + + P++ GH IG+ + H +
Sbjct: 285 NTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTV 344
Query: 182 PNYLEKGVKPNSGPKIKEGMVFCLE 206
P VK +++EG V+ +E
Sbjct: 345 PI-----VKGGEATRMEEGEVYAIE 364
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 49.3 bits (116), Expect = 4e-07
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 23/205 (11%)
Query: 15 RKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVCMSLNE 74
R+A E Q + ++PG++++E+ + ED + FP SLN
Sbjct: 62 REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGC--SLNN 119
Query: 75 VVIHGIPT---DYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESL 131
H P VLQ DI +D G + G D A T+ +P+ + LL K++
Sbjct: 120 CAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTLLKAVKDAT 176
Query: 132 MHAIN----SIR---VGMHFKELSQILESTITERGF--VPLKGFCGHGIGK-KPHEEPEI 181
I +R VG +E+ + E I + + P++ GH IG+ + H +
Sbjct: 177 NTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTV 236
Query: 182 PNYLEKGVKPNSGPKIKEGMVFCLE 206
P VK +++EG V+ +E
Sbjct: 237 PI-----VKGGEATRMEEGEVYAIE 256
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 48.9 bits (115), Expect = 6e-07
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 23/205 (11%)
Query: 15 RKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVCMSLNE 74
R+A E Q + ++PG++++E+ + ED + FP SLN
Sbjct: 170 REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGC--SLNN 227
Query: 75 VVIHGIPT---DYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESL 131
H P VLQ DI +D G + G D A T+ +P+ + LL K++
Sbjct: 228 CAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTLLKAVKDAT 284
Query: 132 MHAIN----SIR---VGMHFKELSQILESTITERGF--VPLKGFCGHGIGK-KPHEEPEI 181
I +R VG +E+ + E I + + P++ GH IG+ + H +
Sbjct: 285 NTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTV 344
Query: 182 PNYLEKGVKPNSGPKIKEGMVFCLE 206
P +K +++EG V+ +E
Sbjct: 345 PI-----IKGGEATRMEEGEVYAIE 364
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 38.5 bits (88), Expect = 8e-04
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 78 HGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMH--AI 135
H T V+ GDI+ L+ + GYY TL + + D L K + +H +
Sbjct: 231 HNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVX--DASLXIWXKNTAVHRRGL 288
Query: 136 NSIRVGMHFKELSQILESTITERGFVPLKGF-CGHGIGKKPHEEPEIPNYLEKGV--KPN 192
I+ G K+++ L + + F GH G H E GV + +
Sbjct: 289 XLIKPGARCKDIASELNXMYRXWDLLRYRTFGYGHSFGVLXHYYGR-----EAGVELRED 343
Query: 193 SGPKIKEGMVFCLEPMVCQKQGEP 216
++ GMV +EPMV +GEP
Sbjct: 344 IXTVLEPGMVVSMEPMVMXPEGEP 367
>pdb|1CHM|B Chain B, Creatine Amidinohydrolase (E.C.3.5.3.3)
Length = 401
Score = 33.1 bits (74), Expect = 0.032
Identities = 32/142 (22%), Positives = 57/142 (39%), Gaps = 8/142 (5%)
Query: 78 HGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMHAINS 137
H T + +GDI+ L+ + GYY TL + S +L + E +
Sbjct: 231 HNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKL 290
Query: 138 IRVGMHFKELSQILESTITERGFVPLKGF-CGHGIGKKPHEEPEIPNYLEKG--VKPNSG 194
I+ G ++++ L + + + F GH G H E G ++ +
Sbjct: 291 IKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGR-----EAGLELREDID 345
Query: 195 PKIKEGMVFCLEPMVCQKQGEP 216
++ GMV +EPM+ +G P
Sbjct: 346 TVLEPGMVVSMEPMIMLPEGLP 367
>pdb|1CHM|A Chain A, Creatine Amidinohydrolase (E.C.3.5.3.3)
Length = 401
Score = 33.1 bits (74), Expect = 0.032
Identities = 32/142 (22%), Positives = 57/142 (39%), Gaps = 8/142 (5%)
Query: 78 HGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMHAINS 137
H T + +GDI+ L+ + GYY TL + S +L + E +
Sbjct: 231 HNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKL 290
Query: 138 IRVGMHFKELSQILESTITERGFVPLKGF-CGHGIGKKPHEEPEIPNYLEKG--VKPNSG 194
I+ G ++++ L + + + F GH G H E G ++ +
Sbjct: 291 IKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGR-----EAGLELREDID 345
Query: 195 PKIKEGMVFCLEPMVCQKQGEP 216
++ GMV +EPM+ +G P
Sbjct: 346 TVLEPGMVVSMEPMIMLPEGLP 367
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 25.8 bits (55), Expect = 5.1
Identities = 8/21 (38%), Positives = 18/21 (85%)
Query: 31 EVRPGVSLLELDKMAEDFIKS 51
++ PG+++ E+D++A++ IKS
Sbjct: 2 QLAPGITMSEIDRIAQNIIKS 22
>pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nucleotide
Phosphodiesterase From Arabidopsis Thaliana
pdb|1JH6|A Chain A, Semi-Reduced Cyclic Nucleotide Phosphodiesterase From
Arabidopsis Thaliana
pdb|1JH6|B Chain B, Semi-Reduced Cyclic Nucleotide Phosphodiesterase From
Arabidopsis Thaliana
pdb|1FSI|A Chain A, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
pdb|1FSI|C Chain C, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
pdb|1FSI|B Chain B, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
Length = 189
Score = 25.8 bits (55), Expect = 5.1
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 6/63 (9%)
Query: 178 EPEIPNYLEKGVKPNSGPKIKEGMVFCLEPM-VCQKQGEPKILADKWSVVSVDGLNT-SH 235
E E N EK +S +G+ F L + +C+ E K L + W V+V LN SH
Sbjct: 129 EEEKKNAQEKAYTLDSS---LDGLSFRLNRLALCKTDTEDKTL-ETWETVAVCNLNPGSH 184
Query: 236 HEH 238
H H
Sbjct: 185 HHH 187
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,540,310
Number of Sequences: 13198
Number of extensions: 67269
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 18
length of query: 253
length of database: 2,899,336
effective HSP length: 86
effective length of query: 167
effective length of database: 1,764,308
effective search space: 294639436
effective search space used: 294639436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)