BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645914|ref|NP_208093.1| ribosomal protein L15
(rpl15) [Helicobacter pylori 26695]
(135 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNR|J Chain J, Crystal Structure Of The Large Ribosoma... 67 9e-13
pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex Wi... 27 0.80
pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex Wi... 27 1.0
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 1.4
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 1.4
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 1.4
pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Compl... 25 2.3
pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex 25 3.0
pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex Wi... 24 5.2
pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph O... 24 5.2
pdb|1HE1|C Chain C, Crystal Structure Of The Complex Betwee... 24 5.2
pdb|1MH1| Small G-Protein 24 5.2
pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyr... 24 5.2
pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp ... 24 5.2
pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human I... 24 6.8
pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Min... 24 6.8
pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmpp... 24 6.8
pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX 24 6.8
pdb|2IG2|H Chain H, Immunoglobulin G1 23 8.9
pdb|1MCO|H Chain H, Immunoglobulin G1 (Igg1) (Mcg) With A H... 23 8.9
pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1... 23 8.9
pdb|1FRT|C Chain C, Fc Receptor (Neonatal) Complexed With F... 23 8.9
pdb|1FCC|A Chain A, Immunoglobin Fc (Igg1) Complexed With P... 23 8.9
pdb|1IIS|B Chain B, Crystal Structure Of A Human Fcg Recept... 23 8.9
pdb|1IIX|B Chain B, Crystal Structure Of A Human Fcg Recept... 23 8.9
pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex Wi... 23 8.9
pdb|1FC2|D Chain D, Immunoglobulin Fc And Fragment B Of Pro... 23 8.9
>pdb|1LNR|J Chain J, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 156
Score = 66.6 bits (161), Expect = 9e-13
Identities = 43/92 (46%), Positives = 53/92 (56%), Gaps = 4/92 (4%)
Query: 3 MGLENLKPAKGSVKKIKRVGRGQGSGMGKTATRGGKGQTARTGYKAKRGFEGGQQPLQRR 62
M L +LKP GS K KRVGRG G G KTA RG KGQ +R+G FEGG+ L R
Sbjct: 1 MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIAR 59
Query: 63 LPKIGFRTKDSHIYSINVEKNEAIKNLEEITF 94
LPK GF + + V K +++LE+ TF
Sbjct: 60 LPKRGFNNVGT---TYEVVKLSQLQDLEDTTF 88
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 26.9 bits (58), Expect = 0.80
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 54 GGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFPLYIEGV 110
GG L + +P RT D +IYS+ + + ++L H++PL GV
Sbjct: 191 GGSTGLSKLIP----RTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGV 243
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-Adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 26.6 bits (57), Expect = 1.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 54 GGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFPLYIEGV 110
GG L + +P RT D +IYS+ + + ++L H++PL GV
Sbjct: 191 GGSTGLSKLIP----RTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGV 243
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 26.2 bits (56), Expect = 1.4
Identities = 13/46 (28%), Positives = 23/46 (49%)
Query: 56 QQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALH 101
+Q L + +P++ R S IY KN + ++ F+ L+ LH
Sbjct: 195 EQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 26.2 bits (56), Expect = 1.4
Identities = 13/46 (28%), Positives = 23/46 (49%)
Query: 56 QQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALH 101
+Q L + +P++ R S IY KN + ++ F+ L+ LH
Sbjct: 195 EQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 26.2 bits (56), Expect = 1.4
Identities = 13/46 (28%), Positives = 23/46 (49%)
Query: 56 QQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALH 101
+Q L + +P++ R S IY KN + ++ F+ L+ LH
Sbjct: 195 EQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
>pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
Length = 119
Score = 25.4 bits (54), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 5 LENLKPAKGSVKKIKRVGRGQGSGMGKTATRG-GKGQTAR 43
L +++P S K+ GRG+G G G+ RG G+G R
Sbjct: 80 LVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 25.0 bits (53), Expect = 3.0
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ F +R HH P + + G K
Sbjct: 60 GQEDYDRLRP-LSYPQTDVFLICFSLVSPASYENVRAKWFPEVR--HHCPSTPIILVGTK 116
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 117 LDLRDDKDTIEKLKEKKL 134
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 177
Score = 24.3 bits (51), Expect = 5.2
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ + +R HH P + + G K
Sbjct: 60 GQEDYDRLRP-LSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTK 116
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 117 LDLRDDKDTIEKLKEKKL 134
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 24.3 bits (51), Expect = 5.2
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ + +R HH P + + G K
Sbjct: 60 GQEDYDRLRP-LSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTK 116
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 117 LDLRDDKDTIEKLKEKKL 134
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 24.3 bits (51), Expect = 5.2
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ + +R HH P + + G K
Sbjct: 60 GQEDYDRLRP-LSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTK 116
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 117 LDLRDDKDTIEKLKEKKL 134
>pdb|1MH1| Small G-Protein
Length = 186
Score = 24.3 bits (51), Expect = 5.2
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ + +R HH P + + G K
Sbjct: 62 GQEDYDRLRP-LSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTK 118
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 119 LDLRDDKDTIEKLKEKKL 136
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 24.3 bits (51), Expect = 5.2
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ + +R HH P + + G K
Sbjct: 60 GQEDYDRLRP-LSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTK 116
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 117 LDLRDDKDTIEKLKEKKL 134
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 24.3 bits (51), Expect = 5.2
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 55 GQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVK 111
GQ+ R P + + D + ++ + +N+ + +R HH P + + G K
Sbjct: 60 GQEDYDRLRP-LSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTK 116
Query: 112 LIGKDAKNLASKIKDERI 129
L +D K+ K+K++++
Sbjct: 117 LDLRDDKDTIEKLKEKKL 134
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 23.9 bits (50), Expect = 6.8
Identities = 10/48 (20%), Positives = 24/48 (49%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ ++E KN +T
Sbjct: 329 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLT 376
>pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Minimized Version Of
The B-Domain From Protein A Called Z34c
Length = 207
Score = 23.9 bits (50), Expect = 6.8
Identities = 10/48 (20%), Positives = 24/48 (49%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ ++E KN +T
Sbjct: 83 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLT 130
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
Length = 192
Score = 23.9 bits (50), Expect = 6.8
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 62 RLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVKLIGKDAK 118
RL + + D + ++ + +N+ + +R HH P + + G KL +D K
Sbjct: 66 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTKLDLRDDK 123
Query: 119 NLASKIKDERI 129
+ K+K++++
Sbjct: 124 DTIEKLKEKKL 134
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 23.9 bits (50), Expect = 6.8
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 62 RLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFP---LYIEGVKLIGKDAK 118
RL + + D + ++ + +N+ + +R HH P + + G KL +D K
Sbjct: 66 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVGTKLDLRDDK 123
Query: 119 NLASKIKDERI 129
+ K+K++++
Sbjct: 124 DTIEKLKEKKL 134
>pdb|2IG2|H Chain H, Immunoglobulin G1
Length = 455
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 328 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 375
>pdb|1MCO|H Chain H, Immunoglobulin G1 (Igg1) (Mcg) With A Hinge Deletion
Length = 428
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 304 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 351
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 97 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 144
>pdb|1FRT|C Chain C, Fc Receptor (Neonatal) Complexed With Fc (Igg) (FcFCRN
Complex)
Length = 205
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 81 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 128
>pdb|1FCC|A Chain A, Immunoglobin Fc (Igg1) Complexed With Protein G (C2
Fragment)
Length = 206
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 82 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 129
>pdb|1IIS|B Chain B, Crystal Structure Of A Human Fcg Receptor In Complex With
An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1IIS|A Chain A, Crystal Structure Of A Human Fcg Receptor In Complex With
An Fc Fragment Of Igg1 (Orthorhombic)
Length = 224
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 96 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 143
>pdb|1IIX|B Chain B, Crystal Structure Of A Human Fcg Receptor In Complex With
An Fc Fragment Of Igg1 (Hexagonal)
pdb|1IIX|A Chain A, Crystal Structure Of A Human Fcg Receptor In Complex With
An Fc Fragment Of Igg1 (Hexagonal)
Length = 224
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 96 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 143
>pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
pdb|1DN2|B Chain B, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
Length = 207
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 83 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 130
>pdb|1FC2|D Chain D, Immunoglobulin Fc And Fragment B Of Protein A Complex
pdb|1FC1|A Chain A, Fc Fragment (Igg1 Class)
pdb|1FC1|B Chain B, Fc Fragment (Igg1 Class)
Length = 224
Score = 23.5 bits (49), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 46 YKAKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEIT 93
YK K + P+++ + K + ++ +Y++ + E KN +T
Sbjct: 97 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 144
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 794,148
Number of Sequences: 13198
Number of extensions: 33127
Number of successful extensions: 85
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 27
length of query: 135
length of database: 2,899,336
effective HSP length: 79
effective length of query: 56
effective length of database: 1,856,694
effective search space: 103974864
effective search space used: 103974864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)