BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645919|ref|NP_208098.1| ribosomal protein S14
(rpS14) [Helicobacter pylori 26695]
(61 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FJG|N Chain N, Structure Of The Thermus Thermophilus 3... 92 1e-20
pdb|1J5E|N Chain N, Structure Of The Thermus Thermophilus 3... 90 4e-20
pdb|1LIY|A Chain A, Human Erythrocyte Pyruvate Kinase: Arg4... 23 4.9
pdb|1LIW|A Chain A, Human Erythrocyte Pyruvate Kinase: Thr3... 23 4.9
pdb|1LIX|A Chain A, Human Erythrocyte Pyruvate Kinase: Arg4... 23 4.9
pdb|1LIU|A Chain A, Human Erythrocyte Pyruvate Kinase >gi|2... 23 4.9
pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna... 23 6.4
>pdb|1FJG|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1IBL|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|N Chain N, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|Q Chain Q, The Path Of Messenger Rna Through The Ribosome. This
File, 1jgq, Contains The 30s Ribosome Subunit, Three
Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
The File 1giy
pdb|1GIX|Q Chain Q, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|Q Chain Q, The Path Of Messenger Rna Through The Ribosome. This
File, 1jgo, Contains The 30s Ribosome Subunit, Three
Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
The File 1giy
pdb|1JGP|Q Chain Q, The Path Of Messenger Rna Through The Ribosome. This
File, 1jgp, Contains The 30s Ribosome Subunit, Three
Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
The File 1giy
Length = 61
Score = 92.0 bits (227), Expect = 1e-20
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 1 MAKKSMIAKAQRKPKFQVRAYTRCRICGRPHSVYRDFGLCRVCLRKMGSEGLIPGLRKAS 60
MA+K++I KA+R PKF+VRAYTRC CGR SVYR FGLCR+CLR++ +G +PG+RKAS
Sbjct: 1 MARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 60
Query: 61 W 61
W
Sbjct: 61 W 61
>pdb|1J5E|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1I94|N Chain N, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|N Chain N, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|N Chain N, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|N Chain N, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 60
Score = 90.1 bits (222), Expect = 4e-20
Identities = 39/60 (65%), Positives = 50/60 (83%)
Query: 2 AKKSMIAKAQRKPKFQVRAYTRCRICGRPHSVYRDFGLCRVCLRKMGSEGLIPGLRKASW 61
A+K++I KA+R PKF+VRAYTRC CGR SVYR FGLCR+CLR++ +G +PG+RKASW
Sbjct: 1 ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 60
>pdb|1LIY|A Chain A, Human Erythrocyte Pyruvate Kinase: Arg479his Mutant
pdb|1LIY|B Chain B, Human Erythrocyte Pyruvate Kinase: Arg479his Mutant
pdb|1LIY|C Chain C, Human Erythrocyte Pyruvate Kinase: Arg479his Mutant
pdb|1LIY|D Chain D, Human Erythrocyte Pyruvate Kinase: Arg479his Mutant
Length = 528
Score = 23.5 bits (49), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 33 VYRDFGLCRVCLRKMGSEGLI 53
+Y D GL + ++K+G EGL+
Sbjct: 171 IYIDDGLISLVVQKIGPEGLV 191
>pdb|1LIW|A Chain A, Human Erythrocyte Pyruvate Kinase: Thr384met Mutant
pdb|1LIW|B Chain B, Human Erythrocyte Pyruvate Kinase: Thr384met Mutant
pdb|1LIW|C Chain C, Human Erythrocyte Pyruvate Kinase: Thr384met Mutant
pdb|1LIW|D Chain D, Human Erythrocyte Pyruvate Kinase: Thr384met Mutant
Length = 528
Score = 23.5 bits (49), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 33 VYRDFGLCRVCLRKMGSEGLI 53
+Y D GL + ++K+G EGL+
Sbjct: 171 IYIDDGLISLVVQKIGPEGLV 191
>pdb|1LIX|A Chain A, Human Erythrocyte Pyruvate Kinase: Arg486trp Mutant
pdb|1LIX|B Chain B, Human Erythrocyte Pyruvate Kinase: Arg486trp Mutant
pdb|1LIX|C Chain C, Human Erythrocyte Pyruvate Kinase: Arg486trp Mutant
pdb|1LIX|D Chain D, Human Erythrocyte Pyruvate Kinase: Arg486trp Mutant
Length = 528
Score = 23.5 bits (49), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 33 VYRDFGLCRVCLRKMGSEGLI 53
+Y D GL + ++K+G EGL+
Sbjct: 171 IYIDDGLISLVVQKIGPEGLV 191
>pdb|1LIU|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|1LIU|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|1LIU|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|1LIU|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 23.5 bits (49), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 33 VYRDFGLCRVCLRKMGSEGLI 53
+Y D GL + ++K+G EGL+
Sbjct: 171 IYIDDGLISLVVQKIGPEGLV 191
>pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna Polymerase
Subunit Rpb10 From Methanobacterium Thermoautotrophicum
Length = 55
Score = 23.1 bits (48), Expect = 6.4
Identities = 14/43 (32%), Positives = 16/43 (36%), Gaps = 18/43 (41%)
Query: 23 RCRICGRPHSVY------------------RDFGLCRVCLRKM 47
RC CG+P S Y D GL R C R+M
Sbjct: 5 RCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRM 47
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.330 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,244
Number of Sequences: 13198
Number of extensions: 10019
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 61
length of database: 2,899,336
effective HSP length: 37
effective length of query: 24
effective length of database: 2,411,010
effective search space: 57864240
effective search space used: 57864240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)