BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645920|ref|NP_208099.1| ribosomal protein L5 (rpl5)
[Helicobacter pylori 26695]
(181 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 Fr... 193 8e-51
pdb|1LNR|D Chain D, Crystal Structure Of The Large Ribosoma... 187 8e-49
pdb|1K8A|F Chain F, Co-Crystal Structure Of Carbomycin A Bo... 81 8e-17
pdb|1B6S|B Chain B, Structure Of N5-Carboxyaminoimidazole R... 26 3.0
pdb|1B6R|A Chain A, N5-Carboxyaminoimidazole Ribonucleotide... 26 3.0
pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethyla... 25 4.0
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 25 5.2
pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Co... 25 5.2
pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Co... 25 5.2
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 1... 25 5.2
pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Co... 25 5.2
pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Mangan... 25 5.2
pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a ... 25 5.2
pdb|1MPP| Pepsin (Renin) (E.C.3.4.23.23) 25 6.8
pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phos... 25 6.8
pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehy... 25 6.8
pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of... 24 8.8
pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 24 8.8
pdb|1WBL|A Chain A, Winged Bean Lectin Complexed With Methy... 24 8.8
pdb|1WBF|A Chain A, Winged Bean Lectin, Saccharide Free For... 24 8.8
>pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus
Stearothermophilus
pdb|1IQ4|B Chain B, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus
Stearothermophilus
Length = 179
Score = 193 bits (491), Expect = 8e-51
Identities = 93/176 (52%), Positives = 132/176 (74%)
Query: 4 LKQFYQSEVRTKLAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQ 63
LK+ Y +EV L + + K+ M +PK+EKIVI++G G ++ K + + + ++LIAGQ
Sbjct: 4 LKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQ 63
Query: 64 KAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRNGFD 123
+ V+T+AKKS+AGF++R+GM +GAKVTLR +RMY FL+KLI +SLPR +DFRG+S+ FD
Sbjct: 64 RPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFD 123
Query: 124 GCGNYTFGINEQLIFPEVVYDDIMVSHGMNITMVTSTDNDKEAFKLLELLGLPFAK 179
G GNYT GI EQLIFPE+ YD + GM+I +VT+ + D+EA +LL LLG+PF K
Sbjct: 124 GRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK 179
>pdb|1LNR|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 180
Score = 187 bits (474), Expect = 8e-49
Identities = 93/176 (52%), Positives = 125/176 (70%)
Query: 4 LKQFYQSEVRTKLAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQ 63
LK Y +VR L Q+ + M +P++EKIV++ G G+ +D K + A+ ++LI Q
Sbjct: 4 LKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQ 63
Query: 64 KAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRNGFD 123
K +ITKAKKS++ FK+R+GM VG KVTLR +RMY FLEKLI I LPR++DFRGI+ N FD
Sbjct: 64 KPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFD 123
Query: 124 GCGNYTFGINEQLIFPEVVYDDIMVSHGMNITMVTSTDNDKEAFKLLELLGLPFAK 179
G GNY GI EQLIFPE+ YD + + GM+IT+VT+ D+EA LL+ +GLPF K
Sbjct: 124 GRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK 179
>pdb|1K8A|F Chain F, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|F Chain F, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|F Chain F, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|F Chain F, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|F Chain F, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|D Chain D, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|D Chain D, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|G Chain G, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 176
Score = 80.9 bits (198), Expect = 8e-17
Identities = 44/128 (34%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 29 PKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFKIREGMAVGAK 88
P++EK+V+ +G G +D+ ++I + I GQ V TKAK++V F IREG +GAK
Sbjct: 16 PRIEKVVVHMGIGHGGRDLANAEDI---LGEITGQMPVRTKAKRTVGEFDIREGDPIGAK 72
Query: 89 VTLRNKRMYNFLEKLIVISLPRVKDFRGISRNGFDGCGNYTFGINEQLIFPEVVYDDIMV 148
VTLR++ FL+ + ++ ++ + FD GN++FG+ E FP YD +
Sbjct: 73 VTLRDEMAEEFLQTALPLA--------ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIG 124
Query: 149 SHGMNITM 156
+G+++T+
Sbjct: 125 IYGLDVTV 132
>pdb|1B6S|B Chain B, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|A Chain A, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|C Chain C, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|D Chain D, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
Length = 355
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 121 GFDGCGNYTFGINEQLIFPEVVYDDIMVSHGMNIT 155
G+DG G + NE P Y + +V G+N +
Sbjct: 125 GYDGRGQWRLRANETEQLPAECYGECIVEQGINFS 159
>pdb|1B6R|A Chain A, N5-Carboxyaminoimidazole Ribonucleotide Synthetase From E.
Coli
Length = 355
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 121 GFDGCGNYTFGINEQLIFPEVVYDDIMVSHGMNIT 155
G+DG G + NE P Y + +V G+N +
Sbjct: 125 GYDGRGQWRLRANETEQLPAECYGECIVEQGINFS 159
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 25.4 bits (54), Expect = 4.0
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 35 VISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNK 94
V V ++KDMK++ N + T + +A V+ + F+I EG+ +
Sbjct: 128 VCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHE------NFEIVEGLMTTVHAVTATQ 181
Query: 95 RMYNFLEKLIVISLPRVKDFRG 116
+ + P KD+RG
Sbjct: 182 K---------TVDGPSAKDWRG 194
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 25.0 bits (53), Expect = 5.2
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 29 PKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFKIREGMAVGAK 88
P+LE +V++ + D+ M+N ++ I AV +K++A ++ +G K
Sbjct: 291 PRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAV----QKAIAHYE----QQMGQK 342
Query: 89 VTLRNKRMYNFLE 101
V L + + L+
Sbjct: 343 VQLPTESLQELLD 355
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 25.0 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 28 LPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
LP +K V+ AG HA + + + +L KA I + SV FK
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFK 113
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 25.0 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 28 LPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
LP +K V+ AG HA + + + +L KA I + SV FK
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFK 113
>pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
Length = 205
Score = 25.0 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 28 LPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
LP +K V+ AG HA + + + +L KA I + SV FK
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFK 113
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 25.0 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 28 LPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
LP +K V+ AG HA + + + +L KA I + SV FK
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFK 113
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution
Length = 205
Score = 25.0 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 28 LPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
LP +K V+ AG HA + + + +L KA I + SV FK
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFK 113
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 25.0 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 28 LPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
LP +K V+ AG HA + + + +L KA I + SV FK
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFK 113
>pdb|1MPP| Pepsin (Renin) (E.C.3.4.23.23)
Length = 361
Score = 24.6 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 120 NGFDGCGNYTFG-INEQLIFPEVVYDDIMVSHG 151
N DG G FG +N L+ ++ Y D++ S G
Sbjct: 174 NTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRG 206
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 24.6 bits (52), Expect = 6.8
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 35 VISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNK 94
V V ++KDMK++ N + T + +A V+ + F+I EG+ +
Sbjct: 128 VCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHE------NFEIVEGLMTTVHAVTATQ 181
Query: 95 RMYNFLEKLIVISLPRVKDFRG 116
+ + P KD+RG
Sbjct: 182 K---------TVDGPSAKDWRG 194
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 24.6 bits (52), Expect = 6.8
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 35 VISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNK 94
V V ++KDMK++ N + T + +A V+ + F+I EG+ +
Sbjct: 128 VCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHE------NFEIVEGLMTTVHAVTATQ 181
Query: 95 RMYNFLEKLIVISLPRVKDFRG 116
+ + P KD+RG
Sbjct: 182 K---------TVDGPSAKDWRG 194
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 24.3 bits (51), Expect = 8.8
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 127 NYTFGINEQLIFPEVVYDDIMVSHGMN 153
+Y FGIN+ + E++ D M HG N
Sbjct: 553 DYRFGINQPGKWREILNTDSMHYHGSN 579
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 24.3 bits (51), Expect = 8.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 62 GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYN 98
G+K ++K+ +++ G G K+T +N+ YN
Sbjct: 25 GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYN 61
>pdb|1WBL|A Chain A, Winged Bean Lectin Complexed With
Methyl-Alpha-D-Galactose
pdb|1WBL|C Chain C, Winged Bean Lectin Complexed With
Methyl-Alpha-D-Galactose
pdb|1WBL|B Chain B, Winged Bean Lectin Complexed With
Methyl-Alpha-D-Galactose
pdb|1WBL|D Chain D, Winged Bean Lectin Complexed With
Methyl-Alpha-D-Galactose
Length = 241
Score = 24.3 bits (51), Expect = 8.8
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 2 FGLKQFYQSEVRTKLAQELDIKNPMLLPKLEKIV------ISVGAGAHAKDMKIMQNIAQ 55
F QF+Q+E + KL ++ I + +L +L K+V S G +AK +++ +
Sbjct: 5 FNFNQFHQNEEQLKLQRDARISSNSVL-ELTKVVNGVPTWNSTGRALYAKPVQVWDSTTG 63
Query: 56 TIS 58
++
Sbjct: 64 NVA 66
>pdb|1WBF|A Chain A, Winged Bean Lectin, Saccharide Free Form
pdb|1WBF|B Chain B, Winged Bean Lectin, Saccharide Free Form
Length = 242
Score = 24.3 bits (51), Expect = 8.8
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 2 FGLKQFYQSEVRTKLAQELDIKNPMLLPKLEKIV------ISVGAGAHAKDMKIMQNIAQ 55
F QF+Q+E + KL ++ I + +L +L K+V S G +AK +++ +
Sbjct: 6 FNFNQFHQNEEQLKLQRDARISSNSVL-ELTKVVNGVPTWNSTGRALYAKPVQVWDSTTG 64
Query: 56 TIS 58
++
Sbjct: 65 NVA 67
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 919,822
Number of Sequences: 13198
Number of extensions: 34681
Number of successful extensions: 75
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 20
length of query: 181
length of database: 2,899,336
effective HSP length: 83
effective length of query: 98
effective length of database: 1,803,902
effective search space: 176782396
effective search space used: 176782396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)