BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645921|ref|NP_208100.1| ribosomal protein L24
(rpl24) [Helicobacter pylori 26695]
(73 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNR|S Chain S, Crystal Structure Of The Large Ribosoma... 63 7e-12
pdb|1FJG|T Chain T, Structure Of The Thermus Thermophilus 3... 23 6.0
pdb|1IBL|T Chain T, Structure Of The Thermus Thermophilus 3... 23 6.0
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular ... 23 6.0
pdb|1I94|T Chain T, Crystal Structures Of The Small Ribosom... 23 6.0
pdb|1DVC| Solution Nmr Structure Of Human Stefin A At Ph ... 23 7.9
>pdb|1LNR|S Chain S, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 115
Score = 62.8 bits (151), Expect = 7e-12
Identities = 31/69 (44%), Positives = 42/69 (59%)
Query: 2 KSEIKKNDIVKVIAGDDKGKVAKVLAVLPKTSQVVVEGCKVVKKAIKPTDDNPKGGFIHK 61
K KK D V V++G KG+ KVL LP+ +VVVEG V+ K +KP+ NP+GG +
Sbjct: 13 KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQR 72
Query: 62 EKPMHISNV 70
E +H S V
Sbjct: 73 ELALHASKV 81
>pdb|1FJG|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1HR0|T Chain T, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1HNW|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|W Chain W, The Path Of Messenger Rna Through The Ribosome. This
File, 1jgq, Contains The 30s Ribosome Subunit, Three
Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
The File 1giy
pdb|1GIX|W Chain W, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|W Chain W, The Path Of Messenger Rna Through The Ribosome. This
File, 1jgo, Contains The 30s Ribosome Subunit, Three
Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
The File 1giy
pdb|1JGP|W Chain W, The Path Of Messenger Rna Through The Ribosome. This
File, 1jgp, Contains The 30s Ribosome Subunit, Three
Trna, And Mrna Molecules. 50s Ribosome Subunit Is In
The File 1giy
Length = 106
Score = 23.1 bits (48), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 18 DKGKVAKVLAVLPKTSQVVVEG-----CKVVKKAIKPTDDNPKGGFIHK 61
+K K + + + K Q+ EG K+++KA D KG +HK
Sbjct: 26 NKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHK 74
>pdb|1IBL|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
Length = 106
Score = 23.1 bits (48), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 18 DKGKVAKVLAVLPKTSQVVVEG-----CKVVKKAIKPTDDNPKGGFIHK 61
+K K + + + K Q+ EG K+++KA D KG +HK
Sbjct: 26 NKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHK 74
>pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
Length = 692
Score = 23.1 bits (48), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 28 VLPKTSQVVVEGCKVVKKAIKPTDDNPKGGF 58
VL T QV +V K+++ D P+GGF
Sbjct: 193 VLTLTDQVTRFNEEVKKQSVSRNRDAPEGGF 223
>pdb|1I94|T Chain T, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|T Chain T, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|T Chain T, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|T Chain T, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 105
Score = 23.1 bits (48), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 18 DKGKVAKVLAVLPKTSQVVVEG-----CKVVKKAIKPTDDNPKGGFIHK 61
+K K + + + K Q+ EG K+++KA D KG +HK
Sbjct: 25 NKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHK 73
>pdb|1DVC| Solution Nmr Structure Of Human Stefin A At Ph 5.5 And 308k,
Nmr, Minimized Average Structure
pdb|1DVD| Solution Nmr Structure Of Human Stefin A At Ph 5.5 And 308k,
Nmr, 17 Structures
Length = 98
Score = 22.7 bits (47), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 8 NDIVKVIAGDDKGKVAKVLAVLP-KTSQVVVEGCKVVK 44
N +KV AGD+K KV LP + +V+ G +V K
Sbjct: 52 NYYIKVRAGDNKYMHLKVFKSLPGQNEDLVLTGYQVDK 89
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,881
Number of Sequences: 13198
Number of extensions: 12702
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 2,899,336
effective HSP length: 49
effective length of query: 24
effective length of database: 2,252,634
effective search space: 54063216
effective search space used: 54063216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)