BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644646|ref|NP_206815.1| hypothetical protein
[Helicobacter pylori 26695]
(350 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KOR|B Chain B, Crystal Structure Of Thermus Thermophil... 34 0.022
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork... 31 0.24
pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of... 31 0.24
pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicilli... 27 3.5
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Lichenifor... 27 4.5
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 26 7.7
pdb|1AJS|A Chain A, Refinement And Comparison Of The Crysta... 26 7.7
pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidi... 26 7.7
pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduc... 26 7.7
pdb|1AJS|B Chain B, Refinement And Comparison Of The Crysta... 26 7.7
>pdb|1KOR|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KH1|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH1|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH1|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KOR|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
Length = 400
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 4 IKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVC 63
+K + +SGGLD+ + +K L + + F G ++ E E A +K +
Sbjct: 1 MKIVLAYSGGLDTSIILKWL-KETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIAL 59
Query: 64 DIREQFFNDVLF 75
D++E+F D +F
Sbjct: 60 DLKEEFVRDFVF 71
>pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1WAJ| Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
Length = 903
Score = 30.8 bits (68), Expect = 0.24
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 210 GLKYYEKPGGGCLLTDI-QVSNKIKNLKEYREMVFEDSVIVKNGRYFVLPHNARLVVARN 268
G+ YY K G + T+I +V N+ K K Y + I+K HN L V
Sbjct: 460 GMMYY-KDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEAL-----HNPNLSVDEP 513
Query: 269 EEENHKLDIQHPLMDKIELLNCKGPLSLVDKNASKEDKELAGRIALGYAKTLKNQAY 325
+ +++ D + +KI+ L+ K SL + + E+AG A K L N Y
Sbjct: 514 LDVDYRFDFSDEIKEKIKKLSAK---SLNEMLFRAQRTEVAGMTAQINRKLLINSLY 567
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
Length = 903
Score = 30.8 bits (68), Expect = 0.24
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 210 GLKYYEKPGGGCLLTDI-QVSNKIKNLKEYREMVFEDSVIVKNGRYFVLPHNARLVVARN 268
G+ YY K G + T+I +V N+ K K Y + I+K HN L V
Sbjct: 460 GMMYY-KDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEAL-----HNPNLSVDEP 513
Query: 269 EEENHKLDIQHPLMDKIELLNCKGPLSLVDKNASKEDKELAGRIALGYAKTLKNQAY 325
+ +++ D + +KI+ L+ K SL + + E+AG A K L N Y
Sbjct: 514 LDVDYRFDFSDEIKEKIKKLSAK---SLNEMLFRAQRTEVAGMTAQINRKLLINSLY 567
>pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|4BLM|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|2BLM|A Chain A, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
pdb|2BLM|B Chain B, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
Length = 265
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 121 PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM 180
P+S +KE +RK+ EV RF+P L+ G + L+ + A LE
Sbjct: 117 PESLKKE----LRKIGDEVTNPERFEPELNEVNPGETQDTSTARALVTSLRAFALEDKLP 172
Query: 181 EKKGFVDREKLLD 193
+K RE L+D
Sbjct: 173 SEK----RELLID 181
>pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 26.6 bits (57), Expect = 4.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 121 PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM 180
P+S +KE +RK+ EV RF+P L+ G + L + A LE
Sbjct: 134 PESLKKE----LRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALEDKLP 189
Query: 181 EKKGFVDREKLLD 193
+K RE L+D
Sbjct: 190 SEK----RELLID 198
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 19/81 (23%)
Query: 111 VLSGEVLGQRP------------KSQRKEALNQVRKLVREVGEEARFDPVLDR---TQAG 155
VLSGE+L Q + + A+N+ RK++ E+ E++ D L + T
Sbjct: 101 VLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALS 160
Query: 156 GKKP----QFLDELLLRPMSA 172
GK FL +L+++ ++A
Sbjct: 161 GKNTGLSNDFLADLVVKAVNA 181
>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 265 VARNEEENHKLDIQHPLMDKIELLNCKGPLSLVDKNASKEDKELAGRIALGYAKTLK 321
+A N NH+ P++ E C L+L D + + ++K + G +LG L+
Sbjct: 60 IANNSSLNHEY---LPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALR 113
>pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1QKS|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOM|B Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOM|A Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
Length = 567
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 216 KPGGGCLLTDIQVSNKIKNLKEYREMVFEDSVIVKNGRYFVLPHNAR--LVVARNEE 270
K G LL D N +K + E D + + RYF+ NAR LVV +E
Sbjct: 317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373
>pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
pdb|1E2R|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
Length = 567
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 216 KPGGGCLLTDIQVSNKIKNLKEYREMVFEDSVIVKNGRYFVLPHNAR--LVVARNEE 270
K G LL D N +K + E D + + RYF+ NAR LVV +E
Sbjct: 317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373
>pdb|1AJS|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 265 VARNEEENHKLDIQHPLMDKIELLNCKGPLSLVDKNASKEDKELAGRIALGYAKTLK 321
+A N NH+ P++ E C L+L D + + ++K + G +LG L+
Sbjct: 60 IANNSSLNHEY---LPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALR 113
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.140 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,013,377
Number of Sequences: 13198
Number of extensions: 85390
Number of successful extensions: 259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 10
length of query: 350
length of database: 2,899,336
effective HSP length: 89
effective length of query: 261
effective length of database: 1,724,714
effective search space: 450150354
effective search space used: 450150354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)