BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645930|ref|NP_208109.1| ribosomal protein L23
(rpl23) [Helicobacter pylori 26695]
(93 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNR|R Chain R, Crystal Structure Of The Large Ribosoma... 50 4e-08
pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T7... 32 0.015
pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant 32 0.015
pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k,... 32 0.015
pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosac... 30 0.033
pdb|2RAN| Annexin V 30 0.033
pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant 30 0.033
pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant 30 0.033
pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant 30 0.033
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 30 0.043
pdb|1SAV| Human Annexin V With Proline Substitution By Th... 29 0.097
pdb|1HVD| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 29 0.097
pdb|1D9Y|A Chain A, Neisseria Gonorrhoeae Ferric Binding Pr... 29 0.097
pdb|1ANW|A Chain A, Annexin V >gi|809186|pdb|1ANW|B Chain B... 29 0.097
pdb|1AVH|A Chain A, Annexin V (Hexagonal Crystal Form) >gi|... 29 0.097
pdb|1HVF| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 29 0.097
pdb|1HVG| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 29 0.097
pdb|1AVC| Bovine Annexin Vi (Calcium-Bound) 28 0.13
pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 I... 28 0.22
pdb|1ALA| Annexin V 27 0.28
pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2 27 0.48
pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune ... 24 3.1
pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase... 23 6.9
pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mu... 23 6.9
pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic A... 22 9.1
pdb|1B2P|A Chain A, Native Mannose-Specific Bulb Lectin Fro... 22 9.1
>pdb|1LNR|R Chain R, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 94
Score = 50.1 bits (118), Expect = 4e-08
Identities = 27/85 (31%), Positives = 46/85 (53%)
Query: 7 IKSILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKINSLKQEGKVKRFR 66
+++ + +EK+ E+GV + TK ++K+ + FG + I+++ GK KR
Sbjct: 6 LQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVG 65
Query: 67 GKLGQRKSFKKFYVKVPEGASIAAL 91
+GQR KK V++ EG SI AL
Sbjct: 66 RFIGQRNDRKKAIVRLAEGQSIEAL 90
>pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k, S228k,
S303k)
Length = 319
Score = 31.6 bits (70), Expect = 0.015
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQEGKVK 63
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E K K
Sbjct: 27 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSELKGK 74
>pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 31.6 bits (70), Expect = 0.015
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQEGKVK 63
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E K K
Sbjct: 27 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSELKGK 74
>pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k, S144k, S228k)
Length = 319
Score = 31.6 bits (70), Expect = 0.015
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQEGKVK 63
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E K K
Sbjct: 27 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSELKGK 74
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|1A8A| Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B| Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 318
Score = 30.4 bits (67), Expect = 0.033
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E
Sbjct: 26 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSE 69
>pdb|2RAN| Annexin V
Length = 316
Score = 30.4 bits (67), Expect = 0.033
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E
Sbjct: 26 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSE 69
>pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 30.4 bits (67), Expect = 0.033
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E
Sbjct: 27 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSE 70
>pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 30.4 bits (67), Expect = 0.033
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E
Sbjct: 27 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSE 70
>pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 30.4 bits (67), Expect = 0.033
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 15 KSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
K LG E +L + TA+ N + Q+ E FKT FG + +N +K E
Sbjct: 27 KGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRD--LVNDMKSE 70
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 30.0 bits (66), Expect = 0.043
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 6 DIKSILYTEKSLGLQEKGVL-VVQTAQNVTKNQLKEVFKTYFG 47
D K++ K LG E ++ ++ NV + Q+++ FK++FG
Sbjct: 367 DAKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFG 409
>pdb|1SAV| Human Annexin V With Proline Substitution By Thioproline
Length = 320
Score = 28.9 bits (63), Expect = 0.097
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
D +++ K LG E+ +L + T++ N + ++ FKT FG + L + LK E
Sbjct: 20 DAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLL--DDLKSE 72
>pdb|1HVD| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutation With Glu
17 Replaced By Gly (E17g)
Length = 319
Score = 28.9 bits (63), Expect = 0.097
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
D +++ K LG E+ +L + T++ N + ++ FKT FG + L + LK E
Sbjct: 19 DAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLL--DDLKSE 71
>pdb|1D9Y|A Chain A, Neisseria Gonorrhoeae Ferric Binding Protein
Length = 309
Score = 28.9 bits (63), Expect = 0.097
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 20 QEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKINSLKQEGK--VKRFRGKLGQR 72
+EKGV V T N +++ TY G LK + K E K V GK GQR
Sbjct: 202 REKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQR 256
>pdb|1ANW|A Chain A, Annexin V
pdb|1ANW|B Chain B, Annexin V
pdb|1ANX|A Chain A, Annexin V
pdb|1ANX|B Chain B, Annexin V
pdb|1ANX|C Chain C, Annexin V
Length = 319
Score = 28.9 bits (63), Expect = 0.097
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
D +++ K LG E+ +L + T++ N + ++ FKT FG + L + LK E
Sbjct: 19 DAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLL--DDLKSE 71
>pdb|1AVH|A Chain A, Annexin V (Hexagonal Crystal Form)
pdb|1AVH|B Chain B, Annexin V (Hexagonal Crystal Form)
pdb|1HAK|A Chain A, Crystal Structure Of Recombinant Human Placental Annexin
V Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1HAK|B Chain B, Crystal Structure Of Recombinant Human Placental Annexin
V Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1AVR| Annexin V (Rhombohedral Crystal Form)
Length = 320
Score = 28.9 bits (63), Expect = 0.097
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
D +++ K LG E+ +L + T++ N + ++ FKT FG + L + LK E
Sbjct: 20 DAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLL--DDLKSE 72
>pdb|1HVF| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) Mutant With Glu 17 Replaced By Gly, Glu 78
Replaced By Gln (E17g,E78q) Complexed With Calcium
Length = 319
Score = 28.9 bits (63), Expect = 0.097
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
D +++ K LG E+ +L + T++ N + ++ FKT FG + L + LK E
Sbjct: 19 DAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLL--DDLKSE 71
>pdb|1HVG| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutant With Glu 78
Replaced By Gln (E78q) (Second Crystal Form)
pdb|1HVE| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutant With Glu 78
Replaced By Gln (E78q)
Length = 319
Score = 28.9 bits (63), Expect = 0.097
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQ-NVTKNQLKEVFKTYFGFEPLKINSLKQE 59
D +++ K LG E+ +L + T++ N + ++ FKT FG + L + LK E
Sbjct: 19 DAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLL--DDLKSE 71
>pdb|1AVC| Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 28.5 bits (62), Expect = 0.13
Identities = 12/43 (27%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Query: 6 DIKSILYTEKSLGLQEKGVL-VVQTAQNVTKNQLKEVFKTYFG 47
D K++ K LG E ++ ++ N + Q+++ FK++FG
Sbjct: 368 DAKALRKAMKGLGTDEDTIIDIITHRSNAQRQQIRQTFKSHFG 410
>pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre
Rna
Length = 175
Score = 27.7 bits (60), Expect = 0.22
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 11/56 (19%)
Query: 14 EKSLGLQEKGVLVVQT------AQNVTKNQLKEVFKTYFGFEPLKINSLKQEGKVK 63
EK G K V +T + N+T+++LKEVF+ + L+I + Q+GK K
Sbjct: 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE-----DALEIRLVSQDGKSK 136
>pdb|1ALA| Annexin V
Length = 321
Score = 27.3 bits (59), Expect = 0.28
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQNVTKNQ-LKEVFKTYFGFEPLKINSLKQE 59
D +++ K +G E+ +L + T++N + Q + FKT FG + ++ LK E
Sbjct: 20 DAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRD--LVDDLKSE 72
>pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2
Length = 96
Score = 26.6 bits (57), Expect = 0.48
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 32 NVTKNQLKEVFKTYFGFEPLKINSLKQEGKVK 63
N+T+++LKEVF+ + L+I + Q+GK K
Sbjct: 27 NITEDELKEVFE-----DALEIRLVSQDGKSK 53
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 23.9 bits (50), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 3 DIMDIKSILYTEKSLGLQEKGVLVVQTAQNVTKN 36
D+ DI + T K+ + E+ VLV + VTK+
Sbjct: 172 DVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKD 205
>pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
6.3.4.14
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
6.3.4.14
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
Length = 449
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 9 SILYTEKSLGLQEK 22
+I Y EK LGLQEK
Sbjct: 436 NIHYLEKKLGLQEK 449
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 9 SILYTEKSLGLQEK 22
+I Y EK LGLQEK
Sbjct: 439 NIHYLEKKLGLQEK 452
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 22.3 bits (46), Expect = 9.1
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 38 LKEVFKTYFGFEPLK 52
+K++ +TY GFE LK
Sbjct: 188 MKKILETYTGFEGLK 202
>pdb|1B2P|A Chain A, Native Mannose-Specific Bulb Lectin From Scilla
Campanulata (Bluebell) At 1.7 Angstroms Resolution
pdb|1B2P|B Chain B, Native Mannose-Specific Bulb Lectin From Scilla
Campanulata (Bluebell) At 1.7 Angstroms Resolution
Length = 119
Score = 22.3 bits (46), Expect = 9.1
Identities = 11/16 (68%), Positives = 12/16 (74%)
Query: 19 LQEKGVLVVQTAQNVT 34
LQ GVLVV T +NVT
Sbjct: 67 LQPDGVLVVITNENVT 82
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,843
Number of Sequences: 13198
Number of extensions: 15588
Number of successful extensions: 47
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 26
length of query: 93
length of database: 2,899,336
effective HSP length: 69
effective length of query: 24
effective length of database: 1,988,674
effective search space: 47728176
effective search space used: 47728176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)