BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645934|ref|NP_208113.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
(377 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 31 0.20
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 31 0.20
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 31 0.20
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 31 0.20
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 31 0.20
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiel... 30 0.45
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 30 0.45
pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts B... 28 1.3
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 28 1.3
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 28 1.3
pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PRO... 28 2.2
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 27 2.9
pdb|1MKP| Crystal Structure Of An Active Site Mutant Of T... 27 4.9
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 27 4.9
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 27 4.9
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 27 4.9
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 26 6.5
pdb|1FYT|E Chain E, Crystal Structure Of A Complex Of A Hum... 26 8.4
pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form Wi... 26 8.4
pdb|1J8H|E Chain E, Crystal Structure Of A Complex Of A Hum... 26 8.4
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.2 bits (69), Expect = 0.20
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 46 DKICLLGPMKSGKTTFALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLIL 105
D + L GP GKTT A +A + +++ + + Q +++ L ++ D+L +
Sbjct: 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL---ERGDVLFI 108
Query: 106 DRIDRLDFSLPKL 118
D I RL+ ++ +L
Sbjct: 109 DEIHRLNKAVEEL 121
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.2 bits (69), Expect = 0.20
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 46 DKICLLGPMKSGKTTFALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLIL 105
D + L GP GKTT A +A + +++ + + Q +++ L ++ D+L +
Sbjct: 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL---ERGDVLFI 108
Query: 106 DRIDRLDFSLPKL 118
D I RL+ ++ +L
Sbjct: 109 DEIHRLNKAVEEL 121
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.2 bits (69), Expect = 0.20
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 46 DKICLLGPMKSGKTTFALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLIL 105
D + L GP GKTT A +A + +++ + + Q +++ L ++ D+L +
Sbjct: 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL---ERGDVLFI 108
Query: 106 DRIDRLDFSLPKL 118
D I RL+ ++ +L
Sbjct: 109 DEIHRLNKAVEEL 121
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.2 bits (69), Expect = 0.20
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 46 DKICLLGPMKSGKTTFALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLIL 105
D + L GP GKTT A +A + +++ + + Q +++ L ++ D+L +
Sbjct: 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL---ERGDVLFI 108
Query: 106 DRIDRLDFSLPKL 118
D I RL+ ++ +L
Sbjct: 109 DEIHRLNKAVEEL 121
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.2 bits (69), Expect = 0.20
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 46 DKICLLGPMKSGKTTFALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLIL 105
D + L GP GKTT A +A + +++ + + Q +++ L ++ D+L +
Sbjct: 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL---ERGDVLFI 108
Query: 106 DRIDRLDFSLPKL 118
D I RL+ ++ +L
Sbjct: 109 DEIHRLNKAVEEL 121
>pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
Length = 519
Score = 30.0 bits (66), Expect = 0.45
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 308 LRENSTNKLALIAHAFPT--PHFLEKQLLWCHKHGFLNIIVVSINAPISATNTPYKHLNF 365
L + ++ LI FP H L +Q W ++ G +NI+ +NA + ++ L
Sbjct: 452 LAKGKAFEVPLIRLGFPLFDRHHLHRQTTWGYE-GAMNIVTTLVNAVLEKLDSDTSQLGK 510
Query: 366 IDFSLDI 372
D+S D+
Sbjct: 511 TDYSFDL 517
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.0 bits (66), Expect = 0.45
Identities = 18/73 (24%), Positives = 38/73 (51%), Gaps = 3/73 (4%)
Query: 46 DKICLLGPMKSGKTTFALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLIL 105
D + L GP G+TT A +A + +++ + + Q +++ L ++ D+L +
Sbjct: 52 DHVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL---ERGDVLFI 108
Query: 106 DRIDRLDFSLPKL 118
D I RL+ ++ +L
Sbjct: 109 DEIHRLNKAVEEL 121
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 32 EPVLNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKV 68
EP + NPL +P + + GP GK+T+ + A +
Sbjct: 594 EPFIANPLNLSPQRRXLIITGPNXGGKSTYXRQTALI 630
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/32 (46%), Positives = 20/32 (61%)
Query: 38 PLLKAPSSDKICLLGPMKSGKTTFALKLAKVF 69
P+ ++P + LLGP +GK T A KLAK F
Sbjct: 9 PVPESPKGVRAVLLGPPGAGKGTQAPKLAKNF 40
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 33 PVLNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVF---KNPVYINYNDMR 81
P L N LK P+ + L+G SGK+T A + + + + + ++ +D+R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLR 408
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 27.7 bits (60), Expect = 2.2
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 294 PKYELYSHDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWCHKHGF 341
P Y+ SHD I +LR KL+ + P Q CH G+
Sbjct: 76 PDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGW 123
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
Length = 444
Score = 27.3 bits (59), Expect = 2.9
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 35 LNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNP 72
L PL + I ++GP GKT A +LAK+ P
Sbjct: 40 LQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77
>pdb|1MKP| Crystal Structure Of An Active Site Mutant Of The Pyst1
Length = 144
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 264 DFALPYSLTPSPSLLNVFENMVFLELYKQFPKYELYSHD 302
+F + Y L +P+L N+FEN + YKQ P + +S +
Sbjct: 27 EFGIKYILNVTPNLPNLFENAGEFK-YKQIPISDHWSQN 64
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 35 LNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNP 72
LN L + I ++GP GKT A +LAK+ P
Sbjct: 40 LNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 35 LNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNP 72
LN L + I ++GP GKT A +LAK+ P
Sbjct: 39 LNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 76
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 35 LNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNP 72
LN L + I ++GP GKT A +LAK+ P
Sbjct: 46 LNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 83
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 26.2 bits (56), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (46%)
Query: 35 LNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNP 72
L PL + I +GP GKT A +LAK+ P
Sbjct: 40 LQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANAP 77
>pdb|1FYT|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 245
Score = 25.8 bits (55), Expect = 8.4
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 9/57 (15%)
Query: 242 EKQRILFLVPNFENNKTKLYLC---DFALPYSLT-PSPSLLNVFENMVFLELYKQFP 294
+K+R ++ + N+T +YLC LPY T S + L V E +L K FP
Sbjct: 68 KKERFSLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTVVE-----DLNKVFP 119
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 25.8 bits (55), Expect = 8.4
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 294 PKYELYSHDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWCHKHGF 341
P Y+ SHD I +LR KL+ + P CH G+
Sbjct: 75 PDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGW 122
>pdb|1J8H|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 246
Score = 25.8 bits (55), Expect = 8.4
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 9/57 (15%)
Query: 242 EKQRILFLVPNFENNKTKLYLC---DFALPYSLT-PSPSLLNVFENMVFLELYKQFP 294
+K+R ++ + N+T +YLC LPY T S + L V E +L K FP
Sbjct: 69 KKERFSLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTVVE-----DLNKVFP 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,264,868
Number of Sequences: 13198
Number of extensions: 95260
Number of successful extensions: 261
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 20
length of query: 377
length of database: 2,899,336
effective HSP length: 90
effective length of query: 287
effective length of database: 1,711,516
effective search space: 491205092
effective search space used: 491205092
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)