BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645935|ref|NP_208114.1| hypothetical protein
[Helicobacter pylori 26695]
(201 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransfe... 27 2.1
pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoen... 26 3.6
pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase Holoen... 26 3.6
pdb|2ORA| Rhodanese (Thiosulfate: Cyanide Sulfurtransfera... 25 4.7
pdb|1DP2|A Chain A, Crystal Structure Of The Complex Betwee... 25 4.7
pdb|1ORB| Thiosulfate:cyanide Sulfurtransferase Mol_id: 1... 25 4.7
pdb|1RHD| Rhodanese (E.C.2.8.1.1) 25 4.7
pdb|1RHS| Sulfur-Substituted Rhodanese 25 4.7
pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal B... 25 6.1
pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tube... 25 8.0
>pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
Length = 244
Score = 26.6 bits (57), Expect = 2.1
Identities = 22/92 (23%), Positives = 40/92 (42%), Gaps = 11/92 (11%)
Query: 121 VLQVK--NNVISHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPF----IQPEDLIAY 174
+LQ K N +FG + + S I+ K D+ +Y++V++ F + + +A
Sbjct: 85 ILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL 144
Query: 175 FKAKRIDLSSASAT-----HLSALLNKALFHL 201
F +D+S S H +N +L L
Sbjct: 145 FLMAEVDISILSMVPREYFHPKPKVNSSLIRL 176
>pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 25.8 bits (55), Expect = 3.6
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 8/64 (12%)
Query: 66 ISGKRNDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVK 125
I +++ FY ++IP D+ LP A +LL + L+K+ R VL+++
Sbjct: 230 IGDEKDSFYGDFIP-DENLPSPVEAAAQSLLSEELEK-------ALSKLSEREAMVLKLR 281
Query: 126 NNVI 129
+I
Sbjct: 282 KGLI 285
>pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 438
Score = 25.8 bits (55), Expect = 3.6
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 8/64 (12%)
Query: 66 ISGKRNDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVK 125
I +++ FY ++IP D+ LP A +LL + L+K+ R VL+++
Sbjct: 336 IGDEKDSFYGDFIP-DENLPSPVEAAAQSLLSEELEK-------ALSKLSEREAMVLKLR 387
Query: 126 NNVI 129
+I
Sbjct: 388 KGLI 391
>pdb|2ORA| Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
pdb|1BOH| Sulfur-Substituted Rhodanese (Orthorhombic Form)
pdb|1BOI| N-Terminally Truncated Rhodanese
Length = 296
Score = 25.4 bits (54), Expect = 4.7
Identities = 31/127 (24%), Positives = 51/127 (39%), Gaps = 27/127 (21%)
Query: 71 NDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVKNNVIS 130
N + N++ + E + + A+ +A +N S+L T QV N+ S
Sbjct: 127 NGGFRNWLKEGHPVTSEPSRPEPAIFKATLN-----RSLLKTYE--------QVLENLES 173
Query: 131 HLFGLVDFLTSKSILAKR----FVDTTNHRVYVMVQFPFIQ----------PEDLIAYFK 176
F LVD L + V + + V PF+ PE+L A F+
Sbjct: 174 KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFE 233
Query: 177 AKRIDLS 183
AK++DL+
Sbjct: 234 AKKVDLT 240
>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
Lipoate
Length = 293
Score = 25.4 bits (54), Expect = 4.7
Identities = 31/127 (24%), Positives = 51/127 (39%), Gaps = 27/127 (21%)
Query: 71 NDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVKNNVIS 130
N + N++ + E + + A+ +A +N S+L T QV N+ S
Sbjct: 127 NGGFRNWLKEGHPVTSEPSRPEPAIFKATLN-----RSLLKTYE--------QVLENLES 173
Query: 131 HLFGLVDFLTSKSILAKR----FVDTTNHRVYVMVQFPFIQ----------PEDLIAYFK 176
F LVD L + V + + V PF+ PE+L A F+
Sbjct: 174 KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFE 233
Query: 177 AKRIDLS 183
AK++DL+
Sbjct: 234 AKKVDLT 240
>pdb|1ORB| Thiosulfate:cyanide Sulfurtransferase Mol_id: 1; Molecule:
Carboxymethylated Rhodanese; Chain: Null; Ec: 2.8.1.1
Length = 296
Score = 25.4 bits (54), Expect = 4.7
Identities = 31/127 (24%), Positives = 51/127 (39%), Gaps = 27/127 (21%)
Query: 71 NDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVKNNVIS 130
N + N++ + E + + A+ +A +N S+L T QV N+ S
Sbjct: 127 NGGFRNWLKEGHPVTSEPSRPEPAIFKATLN-----RSLLKTYE--------QVLENLES 173
Query: 131 HLFGLVDFLTSKSILAKR----FVDTTNHRVYVMVQFPFIQ----------PEDLIAYFK 176
F LVD L + V + + V PF+ PE+L A F+
Sbjct: 174 KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFE 233
Query: 177 AKRIDLS 183
AK++DL+
Sbjct: 234 AKKVDLT 240
>pdb|1RHD| Rhodanese (E.C.2.8.1.1)
Length = 293
Score = 25.4 bits (54), Expect = 4.7
Identities = 31/127 (24%), Positives = 51/127 (39%), Gaps = 27/127 (21%)
Query: 71 NDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVKNNVIS 130
N + N++ + E + + A+ +A +N S+L T QV N+ S
Sbjct: 127 NGGFRNWLKEGHPVTSEPSRPEPAIFKATLN-----RSLLKTYE--------QVLENLES 173
Query: 131 HLFGLVDFLTSKSILAKR----FVDTTNHRVYVMVQFPFIQ----------PEDLIAYFK 176
F LVD L + V + + V PF+ PE+L A F+
Sbjct: 174 KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMDFLTENGFEKSPEELRAMFE 233
Query: 177 AKRIDLS 183
AK++DL+
Sbjct: 234 AKKVDLT 240
>pdb|1RHS| Sulfur-Substituted Rhodanese
Length = 296
Score = 25.4 bits (54), Expect = 4.7
Identities = 31/127 (24%), Positives = 51/127 (39%), Gaps = 27/127 (21%)
Query: 71 NDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVKNNVIS 130
N + N++ + E + + A+ +A +N S+L T QV N+ S
Sbjct: 127 NGGFRNWLKEGHPVTSEPSRPEPAIFKATLN-----RSLLKTYE--------QVLENLES 173
Query: 131 HLFGLVDFLTSKSILAKR----FVDTTNHRVYVMVQFPFIQ----------PEDLIAYFK 176
F LVD L + V + + V PF+ PE+L A F+
Sbjct: 174 KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFE 233
Query: 177 AKRIDLS 183
AK++DL+
Sbjct: 234 AKKVDLT 240
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 25.0 bits (53), Expect = 6.1
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 3 FYRKEATMNALKKLSFCALLSLGLFAQTAHAKHLKGTINYPDWLEINFFDEKNPPNQYVG 62
FY ++T ++KLSF A T A G + Y +++F + N+
Sbjct: 318 FYGDKST-EPVQKLSFDGQKVYRTIANTDVAAWPNGKV-YLGVTKVDFSQYDDQKNE-TS 374
Query: 63 SASISGKRNDFYANYIPYDDQLPPEQNAEKI 93
+ + KRN+ + + DQLPPE E +
Sbjct: 375 TQTYDSKRNNGHVSAQDSIDQLPPETTDEPL 405
>pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa
pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa
Length = 366
Score = 24.6 bits (52), Expect = 8.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 133 FGLVDFLTSKSILAKRFVDTTNHRVY 158
FG + T++ ++ +RF D N R Y
Sbjct: 98 FGRIAATTARQVMLQRFRDAENERTY 123
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,046,740
Number of Sequences: 13198
Number of extensions: 41080
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 10
length of query: 201
length of database: 2,899,336
effective HSP length: 84
effective length of query: 117
effective length of database: 1,790,704
effective search space: 209512368
effective search space used: 209512368
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)