BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645937|ref|NP_208116.1| hypothetical protein
[Helicobacter pylori 26695]
(83 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongati... 26 0.67
pdb|1DT1|A Chain A, Thermus Thermophilus Cytochrome C552 Sy... 26 0.87
pdb|1FOC|A Chain A, Cytochrome C557: Improperly Folded Ther... 26 0.87
pdb|1C52| Thermus Thermophilus Cytochrome-C552: A New Hig... 26 0.87
pdb|1CG5|A Chain A, Deoxy Form Hemoglobin From Dasyatis Aka... 23 4.3
pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase >gi|1... 23 5.7
pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces ... 23 7.4
pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic ... 23 7.4
pdb|1B8G|B Chain B, 1-Aminocyclopropane-1-Carboxylate Synth... 23 7.4
pdb|1DSF|L Chain L, The Crystal Structure Of The Disulfide-... 22 9.7
pdb|1NBV|L Chain L, Fab (Bv04-01) Autoantibody Binding Sing... 22 9.7
pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex ... 22 9.7
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba
Complex
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
Length = 458
Score = 26.2 bits (56), Expect = 0.67
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 17 KEALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIK 70
KE H N + +++SG T+G HLI D+++++ FEKE E K
Sbjct: 3 KEKSHINVVVIGHVDSGKS---TTTG--HLIYKCGGIDKRTIEKFEKEAAELGK 51
>pdb|1DT1|A Chain A, Thermus Thermophilus Cytochrome C552 Synthesized By
Escherichia Coli
Length = 129
Score = 25.8 bits (55), Expect = 0.87
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 2/44 (4%)
Query: 35 KHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRENRIT 78
K ++ + NH I ++ D K VK F+ E +K+LR ++T
Sbjct: 74 KDEEIAAVLNH--IATAWGDAKKVKGFKPFTAEEVKKLRAKKLT 115
>pdb|1FOC|A Chain A, Cytochrome C557: Improperly Folded Thermus Thermophilus
C552
pdb|1FOC|B Chain B, Cytochrome C557: Improperly Folded Thermus Thermophilus
C552
Length = 132
Score = 25.8 bits (55), Expect = 0.87
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 2/44 (4%)
Query: 35 KHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRENRIT 78
K ++ + NH I ++ D K VK F+ E +K+LR ++T
Sbjct: 77 KDEEIAAVLNH--IATAWGDAKKVKGFKPFTAEEVKKLRAKKLT 118
>pdb|1C52| Thermus Thermophilus Cytochrome-C552: A New Highly Thermostable
Cytochrome-C Structure Obtained By Mad Phasing
Length = 131
Score = 25.8 bits (55), Expect = 0.87
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 2/44 (4%)
Query: 35 KHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRENRIT 78
K ++ + NH I ++ D K VK F+ E +K+LR ++T
Sbjct: 76 KDEEIAAVLNH--IATAWGDAKKVKGFKPFTAEEVKKLRAKKLT 117
>pdb|1CG5|A Chain A, Deoxy Form Hemoglobin From Dasyatis Akajei
pdb|1CG8|A Chain A, Co Form Hemoglobin From Dasyatis Akajei
Length = 141
Score = 23.5 bits (49), Expect = 4.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 2 NPEKATHCKEIRKILKEALHDNKDLNLYLES-GSKHAKLTSGANHLIIP 49
N + H K + L +A H +L+L+LE KH G N L+ P
Sbjct: 53 NEQVKKHGKRVMNALADATHHLDNLHLHLEDLARKH-----GENLLVDP 96
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 23.1 bits (48), Expect = 5.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 29 YLESGSKHAKLTSGANHLIIPSSPSDRKSVKNFEKEL 65
+ E S +GA+H IIP D + F +EL
Sbjct: 312 FREQXSAAGFTLAGADHAIIPVXLGDAVVAQKFAREL 348
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/26 (26%), Positives = 19/26 (72%)
Query: 49 PSSPSDRKSVKNFEKELTEFIKRLRE 74
P+SP++ ++ F+ ++++KR++E
Sbjct: 118 PASPANVEAATLFKDHKSQYVKRVKE 143
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 22.7 bits (47), Expect = 7.4
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 14 KILKEALHDNKDLNLYL 30
K+LK+ L D+ D+N YL
Sbjct: 203 KMLKDFLEDDTDVNQYL 219
>pdb|1B8G|B Chain B, 1-Aminocyclopropane-1-Carboxylate Synthase
pdb|1B8G|A Chain A, 1-Aminocyclopropane-1-Carboxylate Synthase
Length = 429
Score = 22.7 bits (47), Expect = 7.4
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 19 ALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRENR 76
A++ N D+ + + L S ++ + SD+K KN+ + E KRL++ +
Sbjct: 282 AIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNY---IAENHKRLKQRQ 336
>pdb|1DSF|L Chain L, The Crystal Structure Of The Disulfide-Stabilized Fv
Fragment Of Anticancer Antibody B1: Conformational
Influence Of An Engineered Disulfide Bond
Length = 112
Score = 22.3 bits (46), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 15 ILKEALHDNKDLNLYLESGSKHAKLTSG 42
ILK + + +DL +Y S S H LT G
Sbjct: 77 ILKISRVEAEDLGVYFCSQSTHVPLTFG 104
>pdb|1NBV|L Chain L, Fab (Bv04-01) Autoantibody Binding Single-Stranded Dna
(Unliganded Form)
pdb|1CBV|L Chain L, Fab (Bv04-01) Autoantibody Binding Single-Stranded Dna
Complexed With The Trinucleotide Ttt (Liganded Form)
Length = 219
Score = 22.3 bits (46), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 16 LKEALHDNKDLNLYLESGSKHAKLTSGA 43
LK + + +DL +Y S S H LT GA
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPLTFGA 105
>pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex With Dna: A New
Dna-Binding Motif
Length = 92
Score = 22.3 bits (46), Expect = 9.7
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 56 KSVKNFEKELTEFIKRLRENRITHETC 82
+S+ ++++L I+R +N++ TC
Sbjct: 51 ESLSEYQRQLIRKIRRRGKNKVAARTC 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,365
Number of Sequences: 13198
Number of extensions: 17051
Number of successful extensions: 37
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 13
length of query: 83
length of database: 2,899,336
effective HSP length: 59
effective length of query: 24
effective length of database: 2,120,654
effective search space: 50895696
effective search space used: 50895696
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)