BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645938|ref|NP_208117.1| fumarase (fumC)
[Helicobacter pylori 26695]
(463 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid >... 587 e-169
pdb|1FUO|A Chain A, Fumarase C With Bound Citrate >gi|19421... 587 e-169
pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.... 586 e-168
pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substr... 585 e-168
pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish ... 585 e-168
pdb|1YFM| Recombinant Yeast Fumarase 534 e-153
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase >gi|23... 323 2e-89
pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 63 6e-11
pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 63 6e-11
pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate ... 59 9e-10
pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccina... 59 1e-09
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 53 8e-08
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 51 3e-07
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 50 4e-07
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 50 7e-07
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 50 7e-07
pdb|1AOS|A Chain A, Human Argininosuccinate Lyase >gi|29146... 44 3e-05
pdb|1K62|B Chain B, Crystal Structure Of The Human Arginino... 44 3e-05
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 29 0.98
pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) ... 27 4.9
pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x) 27 4.9
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistan... 27 4.9
>pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 587 bits (1514), Expect = e-169
Identities = 291/457 (63%), Positives = 362/457 (78%)
Query: 4 RIEHDTMGEIKVNDSQYWGAQTQRSLENFKIGTEKMPKELIGAFAKLKRSLAVVNHKLGK 63
R E D+MG I V + WGAQTQRSLE+F+I TEKMP LI A A KR+ A VN LG
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGL 64
Query: 64 LSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFRE 123
LS EK+ AI +A D +L G+ EFPLAIWQTGSGTQ+NMN+NEV+AN+A+E+LGG
Sbjct: 65 LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGM 124
Query: 124 KKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKI 183
++ +HPNDDVN SQSSND FPTAMH+ ++L + +L+P L+ L +T EKS+ F +IVKI
Sbjct: 125 ERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKI 184
Query: 184 GRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSE 243
GRTHLQDATPLTLGQE SG+ +MLEH+ + I SL H+ ELA+GGTAVGTGLN H E +
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYAR 244
Query: 244 KVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRC 303
+VA+EL+ + FV+APNKF AL + DA+ AHGA K LAA+LMKIAND+RWLASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 304 GLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVFKPV 363
G+GE++IPENEPGSSIMPGKVNPTQCEA+TM+ QVMGND AI + + GNFELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 364 IIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKI 423
+I+NFLQS+RLL+D MESFN HCA GIEPNRE+I+ L+ SLMLVTALN H+GY+ AA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 424 AKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIG 460
AK AHK+G++LK +AL L LS +FD +V PE+M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
Length = 467
Score = 587 bits (1514), Expect = e-169
Identities = 291/457 (63%), Positives = 362/457 (78%)
Query: 4 RIEHDTMGEIKVNDSQYWGAQTQRSLENFKIGTEKMPKELIGAFAKLKRSLAVVNHKLGK 63
R E D+MG I V + WGAQTQRSLE+F+I TEKMP LI A A KR+ A VN LG
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGL 64
Query: 64 LSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFRE 123
LS EK+ AI +A D +L G+ EFPLAIWQTGSGTQ+NMN+NEV+AN+A+E+LGG
Sbjct: 65 LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGM 124
Query: 124 KKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKI 183
++ +HPNDDVN SQSSND FPTAMH+ ++L + +L+P L+ L +T EKS+ F +IVKI
Sbjct: 125 ERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKI 184
Query: 184 GRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSE 243
GRTHLQDATPLTLGQE SG+ +MLEH+ + I SL H+ ELA+GGTAVGTGLN H E +
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYAR 244
Query: 244 KVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRC 303
+VA+EL+ + FV+APNKF AL + DA+ AHGA K LAA+LMKIAND+RWLASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 304 GLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVFKPV 363
G+GE++IPENEPGSSIMPGKVNPTQCEA+TM+ QVMGND AI + + GNFELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 364 IIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKI 423
+I+NFLQS+RLL+D MESFN HCA GIEPNRE+I+ L+ SLMLVTALN H+GY+ AA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 424 AKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIG 460
AK AHK+G++LK +AL L LS +FD +V PE+M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 586 bits (1511), Expect = e-168
Identities = 290/457 (63%), Positives = 362/457 (78%)
Query: 4 RIEHDTMGEIKVNDSQYWGAQTQRSLENFKIGTEKMPKELIGAFAKLKRSLAVVNHKLGK 63
R E D+MG I V + WGAQTQRSLE+F+I TEKMP LI A A KR+ A VN LG
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGL 64
Query: 64 LSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFRE 123
LS EK+ AI +A D +L G+ EFPLAIWQTGSGTQ+NMN+NEV+AN+A+E+LGG
Sbjct: 65 LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGM 124
Query: 124 KKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKI 183
++ +HPNDDVN SQSSND FPTAMH+ ++L + +L+P L+ L +T EKS+ F +IVKI
Sbjct: 125 ERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKI 184
Query: 184 GRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSE 243
GRTHLQDATPLTLGQE SG+ +MLEH+ + I SL H+ ELA+GGTAVGTGLN H E +
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYAR 244
Query: 244 KVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRC 303
+VA+EL+ + FV+APNKF AL + DA+ AHGA K LAA+LMKIAND+RWLASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 304 GLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVFKPV 363
G+GE++IPEN+PGSSIMPGKVNPTQCEA+TM+ QVMGND AI + + GNFELNVF+P+
Sbjct: 305 GIGEISIPENQPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 364 IIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKI 423
+I+NFLQS+RLL+D MESFN HCA GIEPNRE+I+ L+ SLMLVTALN H+GY+ AA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 424 AKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIG 460
AK AHK+G++LK +AL L LS +FD +V PE+M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 585 bits (1507), Expect = e-168
Identities = 290/457 (63%), Positives = 362/457 (78%)
Query: 4 RIEHDTMGEIKVNDSQYWGAQTQRSLENFKIGTEKMPKELIGAFAKLKRSLAVVNHKLGK 63
R E D+MG I V + WGAQTQRSLE+F+I TEKMP LI A A KR+ A VN LG
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGL 64
Query: 64 LSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFRE 123
LS EK+ AI +A D +L G+ EFPLAIWQTGSGTQ+NMN+NEV+AN+A+E+LGG
Sbjct: 65 LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGM 124
Query: 124 KKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKI 183
++ +HPNDDVN SQSSND FPTAMH+ ++L + +L+P L+ L +T EKS+ F +IVKI
Sbjct: 125 ERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKI 184
Query: 184 GRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSE 243
GRT+LQDATPLTLGQE SG+ +MLEH+ + I SL H+ ELA+GGTAVGTGLN H E +
Sbjct: 185 GRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYAR 244
Query: 244 KVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRC 303
+VA+EL+ + FV+APNKF AL + DA+ AHGA K LAA+LMKIAND+RWLASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 304 GLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVFKPV 363
G+GE++IPENEPGSSIMPGKVNPTQCEA+TM+ QVMGND AI + + GNFELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 364 IIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKI 423
+I+NFLQS+RLL+D MESFN HCA GIEPNRE+I+ L+ SLMLVTALN H+GY+ AA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 424 AKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIG 460
AK AHK+G++LK +AL L LS +FD +V PE+M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 585 bits (1507), Expect = e-168
Identities = 290/457 (63%), Positives = 362/457 (78%)
Query: 4 RIEHDTMGEIKVNDSQYWGAQTQRSLENFKIGTEKMPKELIGAFAKLKRSLAVVNHKLGK 63
R E D+MG I V + WGAQTQRSLE+F+I TEKMP LI A A KR+ A VN LG
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGL 64
Query: 64 LSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFRE 123
LS EK+ AI +A D +L G+ EFPLAIWQTGSGTQ+NMN+NEV+AN+A+E+LGG
Sbjct: 65 LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGM 124
Query: 124 KKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKI 183
++ ++PNDDVN SQSSND FPTAMH+ ++L + +L+P L+ L +T EKS+ F +IVKI
Sbjct: 125 ERKVNPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKI 184
Query: 184 GRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSE 243
GRTHLQDATPLTLGQE SG+ +MLEH+ + I SL H+ ELA+GGTAVGTGLN H E +
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYAR 244
Query: 244 KVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRC 303
+VA+EL+ + FV+APNKF AL + DA+ AHGA K LAA+LMKIAND+RWLASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 304 GLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVFKPV 363
G+GE++IPENEPGSSIMPGKVNPTQCEA+TM+ QVMGND AI + + GNFELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 364 IIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKI 423
+I+NFLQS+RLL+D MESFN HCA GIEPNRE+I+ L+ SLMLVTALN H+GY+ AA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 424 AKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIG 460
AK AHK+G++LK +AL L LS +FD +V PE+M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1YFM| Recombinant Yeast Fumarase
Length = 488
Score = 534 bits (1375), Expect = e-153
Identities = 275/462 (59%), Positives = 340/462 (73%), Gaps = 3/462 (0%)
Query: 3 FRIEHDTMGEIKVNDSQYWGAQTQRSLENFKIG--TEKMPKELIGAFAKLKRSLAVVNHK 60
FR E D GEI V +YWGAQTQRS +NFKIG E+MP L+ AF LK+S A+VN
Sbjct: 28 FRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNES 87
Query: 61 LGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGN 120
LG L + S+AI +A D + G+L FPL ++QTGSGTQ+NMN NEVI+N+A EILGG
Sbjct: 88 LGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGK 147
Query: 121 FREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEI 180
K+ +HPN+ N SQSSNDTFPT MHI + L+I + L+P L NL + KS++F I
Sbjct: 148 IGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHI 206
Query: 181 VKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKE 240
VKIGRTHLQDATPLTLGQEFSGY +E+ Q++ SL+ L LA GGTAVGTGLN
Sbjct: 207 VKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 266
Query: 241 LSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASG 300
K+AE++S+ +G+KF +APN+F AL +HDAI GA LA +L KIA DIR+L SG
Sbjct: 267 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 326
Query: 301 PRCGLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVF 360
PRCG EL +PENEPGSSIMPGKVNPTQ EA+T V VQVMGN+ AI A SQG FELNVF
Sbjct: 327 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 386
Query: 361 KPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENA 420
KPV+I N L S+RL++D+ SF +HC GI+ N +I L SLMLVTALNP +GY+ A
Sbjct: 387 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 446
Query: 421 AKIAKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIGPK 462
+K+AKNAHKKGI+LKESALEL +L+ ++FD++VVPE M+GPK
Sbjct: 447 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488
>pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 323 bits (829), Expect = 2e-89
Identities = 175/461 (37%), Positives = 272/461 (58%), Gaps = 4/461 (0%)
Query: 4 RIEHDTMGEIKVNDSQYWGAQTQRSLENFKIGTEKMPK--ELIGAFAKLKRSLAVVNHKL 61
RIE D +G +V Y+G T R++ENF I K+ E + +K++ A+ N +L
Sbjct: 6 RIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKEL 65
Query: 62 GKLSLEKSQAIIKACDCILKGELC-GEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGN 120
+ + AII ACD +L C +FP+ ++Q G+GT NMN NEV+AN E++G
Sbjct: 66 QTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQ 125
Query: 121 FREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEI 180
E + ++PND VN QS+ND +PT I +V +L+ ++ L + F+ K+ +F++I
Sbjct: 126 KGEYQYLNPNDHVNKCQSTNDAYPTGFRI-AVYSSLIKLVDAINQLREGFERKAVEFQDI 184
Query: 181 VKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKE 240
+K+GRT LQDA P+TLGQEF ++ +L+ + I + E L E+ +G TA+GTGLN KE
Sbjct: 185 LKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKE 244
Query: 241 LSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASG 300
S ++L++ +G V A + A + A HGA K LA + KI ND+R L+SG
Sbjct: 245 YSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSG 304
Query: 301 PRCGLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAIGIAASQGNFELNVF 360
PR GL E+N+PE + GSSIMP KVNP E + V +V+GNDT + +AA G +LNV
Sbjct: 305 PRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVM 364
Query: 361 KPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENA 420
+PVI +S+ +L+++ + C +GI N+E + Y+++S+ +VT LNP +G+ N
Sbjct: 365 EPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNG 424
Query: 421 AKIAKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIGP 461
+ K + G S++E LE LL+ + D + ++ P
Sbjct: 425 DIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHP 465
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 63.2 bits (152), Expect = 6e-11
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 14/198 (7%)
Query: 138 SSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDATPLTLG 197
+S+D TA + ++++E LL SL+ E + ++K IGRTH A P + G
Sbjct: 92 TSSDVLDTA-NSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 150
Query: 198 QEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVAEELSQFSGVKF 257
+ G+ S ++ + Q++ ++E + I G AVG N E+ EK L G+K
Sbjct: 151 LKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVPPEVEEKALSYL----GLKP 205
Query: 258 VSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRCGLGELNIP--ENEP 315
+ + D A+ +AA + +IA +IR L R + E+ P + +
Sbjct: 206 EPVSTQ---VVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQR 259
Query: 316 GSSIMPGKVNPTQCEAMT 333
GSS MP K NP CE +T
Sbjct: 260 GSSAMPHKKNPITCERLT 277
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 63.2 bits (152), Expect = 6e-11
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 14/198 (7%)
Query: 138 SSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDATPLTLG 197
+S+D TA + ++++E LL SL+ E + ++K IGRTH A P + G
Sbjct: 93 TSSDVLDTA-NSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 151
Query: 198 QEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVAEELSQFSGVKF 257
+ G+ S ++ + Q++ ++E + I G AVG N E+ EK L G+K
Sbjct: 152 LKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVPPEVEEKALSYL----GLKP 206
Query: 258 VSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRCGLGELNIP--ENEP 315
+ + D A+ +AA + +IA +IR L R + E+ P + +
Sbjct: 207 EPVSTQ---VVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQR 260
Query: 316 GSSIMPGKVNPTQCEAMT 333
GSS MP K NP CE +T
Sbjct: 261 GSSAMPHKKNPITCERLT 278
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 59.3 bits (142), Expect = 9e-10
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 10/209 (4%)
Query: 133 VNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDAT 192
V+ +S D TA+ + + + LL LE + KEK+++ K V +GRTH A
Sbjct: 88 VHYGLTSTDVVDTALSYL-LKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAE 146
Query: 193 PLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVAEELSQF 252
P T G + + + ++ + ++ ++ + I G AVGT N + + V E+L
Sbjct: 147 PTTFGLKLALWHEEMKRNLERFKQAKAGIEVGKISG-AVGTYANIDPFVEQYVCEKL--- 202
Query: 253 SGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGPRCGLGELNIPE 312
G+K +AP L D A +A ++ K A +IR L + E +
Sbjct: 203 -GLK--AAPISTQTL-QRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEF-FAK 257
Query: 313 NEPGSSIMPGKVNPTQCEAMTMVAVQVMG 341
+ GSS MP K NP E MT +A + G
Sbjct: 258 GQKGSSAMPHKRNPIGSENMTGMARVIRG 286
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 58.9 bits (141), Expect = 1e-09
Identities = 61/212 (28%), Positives = 103/212 (47%), Gaps = 28/212 (13%)
Query: 133 VNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEK----SQQFKEIVKIGRTHL 188
V+ +SND TA + + R L +++ + ++ ++++K + +GRTH
Sbjct: 90 VHYGATSNDIIDTAWAL-----LIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHG 144
Query: 189 QDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVAEE 248
Q A P+TLG +F+ Y L + +Q+ + E +R IGG AVGT + + EL +V
Sbjct: 145 QWAEPITLGFKFANYYYELYIACRQLALAEEFIR-AKIGG-AVGT-MASWGELGLEVRRR 201
Query: 249 LSQFSGVKFVSAPNKFHALTS----HDAIAYAHGAFKALAANLMKIANDIRWLASGPRCG 304
+++ G+ H +T+ ++ A A +AA ++A +IR L S P G
Sbjct: 202 VAERLGL-------PHHVITTQVAPRESFAVLASALALMAAVFERLAVEIREL-SRPEIG 253
Query: 305 LGELNIPENEPGSSIMPGKVNPTQCEAMTMVA 336
+ E GSS MP K NPT E + +A
Sbjct: 254 ----EVVEGGGGSSAMPHKANPTASERIVSLA 281
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 52.8 bits (125), Expect = 8e-08
Identities = 75/291 (25%), Positives = 123/291 (41%), Gaps = 37/291 (12%)
Query: 65 SLEKSQAIIKA-CDCILKG-----ELCGEFPLAIWQTGSGTQTNMN--LNEVIANKATEI 116
+LEK+ + K + IL G E + L + Q+ QT + L E+I + A ++
Sbjct: 48 ALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKL 107
Query: 117 LGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQ 176
G R ++++ D+ + S+ +SV+ TH L L+KT E++
Sbjct: 108 QTGRSRNEQVV---TDLKLLLKSS---------ISVIS-THLL-----QLIKTLVERAAI 149
Query: 177 FKEIVKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIG-GTAVGTGL 235
+I+ G THLQ A P+ Q +A L +++ E + + L +G G G L
Sbjct: 150 EIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPL 209
Query: 236 NAHKELSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIR 295
+EL + EL S N A++ D + L +L K+A D+
Sbjct: 210 EIDREL---LRSELDMTS-----ITLNSIDAISERDFVVELISVATLLMIHLSKLAEDL- 260
Query: 296 WLASGPRCGLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAI 346
+ S G L+ GSS++P K NP E + A +V G AI
Sbjct: 261 IIFSTTEFGFVTLS-DAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAI 310
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 50.8 bits (120), Expect = 3e-07
Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 31/289 (10%)
Query: 60 KLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGG 119
K G L+ + + I+ + I + G F + T L E+I + A ++ G
Sbjct: 53 KAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTG 112
Query: 120 NFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKE 179
R +++ D+ + ++ + I+S TH L L+KT E++ +
Sbjct: 113 RSRNDQVV---TDLKLFMKNS------LSIIS----THLL-----QLIKTLVERAAIEID 154
Query: 180 IVKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIG-GTAVGTGLNAH 238
++ G THLQ A P+ Q +A L +++ E + + L +G G G L+
Sbjct: 155 VILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDID 214
Query: 239 KELSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLA 298
+E+ + EL +F+ + N A++ D + L +L K+A D+ +
Sbjct: 215 REM---LRSEL-EFASISL----NSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYS 266
Query: 299 SGPRCGLGELNIPEN-EPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAI 346
+ G L + + GSS+MP K NP E + A +V G +I
Sbjct: 267 TSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 312
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 50.4 bits (119), Expect = 4e-07
Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 31/250 (12%)
Query: 99 TQTNMNLNEVIANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHR 158
T L E+I + A ++ G R ++++ D+ + ++ + I+S TH
Sbjct: 90 TANERRLKELIGDIAGKLHTGRSRNEQVV---TDLKLFMKNS------LSIIS----THL 136
Query: 159 LLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESL 218
L L+KT E++ +++ G THLQ A P+ Q +A L +++ E
Sbjct: 137 L-----QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK 191
Query: 219 EHLRELAIG-GTAVGTGLNAHKELSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAH 277
+ + L +G G G L+ +E+ + EL +F+ + N A++ D +
Sbjct: 192 KRINVLPLGSGALAGNPLDIDREM---LRSEL-EFASISL----NSMDAISERDFVVEFL 243
Query: 278 GAFKALAANLMKIANDIRWLASGPRCGLGELNIPEN-EPGSSIMPGKVNPTQCEAMTMVA 336
L +L K+A D+ ++ G L + + GSS+MP K NP E + +
Sbjct: 244 SVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKS 300
Query: 337 VQVMGNDTAI 346
+V G +I
Sbjct: 301 GRVFGRLASI 310
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 49.7 bits (117), Expect = 7e-07
Identities = 66/288 (22%), Positives = 121/288 (41%), Gaps = 29/288 (10%)
Query: 60 KLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGG 119
K G L+ + + I+ + I + G F + T L E+I + A ++ G
Sbjct: 53 KAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTG 112
Query: 120 NFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKE 179
R +++ D+ + ++ + I+S TH L L+KT E++ +
Sbjct: 113 RSRNDQVV---TDLKLFMKNS------LSIIS----THLL-----QLIKTLVERAAIEID 154
Query: 180 IVKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIG-GTAVGTGLNAH 238
++ G THLQ A P+ Q +A L +++ E + + L +G G G L+
Sbjct: 155 VILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDID 214
Query: 239 KELSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLA 298
+E+ + EL +F+ + N A++ D + L +L K+A D+ +
Sbjct: 215 REM---LRSEL-EFASISL----NSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYS 266
Query: 299 SGPRCGLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAI 346
+ L + + GSS+MP K NP E + A +V G +I
Sbjct: 267 TSEFGFLTDSD--AFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 312
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 49.7 bits (117), Expect = 7e-07
Identities = 66/289 (22%), Positives = 122/289 (41%), Gaps = 31/289 (10%)
Query: 60 KLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGG 119
K G L+ + + I+ + I + G F + T L E+I + A ++ G
Sbjct: 53 KAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTG 112
Query: 120 NFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKE 179
R +++ D+ + ++ + I+S TH L L+KT E++ +
Sbjct: 113 RSRNDQVV---TDLKLFMKNS------LSIIS----THLL-----QLIKTLVERAAIEID 154
Query: 180 IVKIGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIG-GTAVGTGLNAH 238
++ G THLQ A P+ Q +A L +++ E + + L +G G G L+
Sbjct: 155 VILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDID 214
Query: 239 KELSEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLA 298
+E+ + EL +F+ + N A++ D + L +L K+A D+ +
Sbjct: 215 REM---LRSEL-EFASISL----NSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYS 266
Query: 299 SGPRCGLGELNIPEN-EPGSSIMPGKVNPTQCEAMTMVAVQVMGNDTAI 346
+ G L + + G+S+MP K NP E + A +V G +I
Sbjct: 267 TSE---FGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASI 312
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 44.3 bits (103), Expect = 3e-05
Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 27/280 (9%)
Query: 66 LEKSQAIIKA-CDCILKG--ELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFR 122
LEK+ + KA D IL G ++ E+ ++ S + NE + E++G
Sbjct: 49 LEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHTANE---RRLKELIGATAG 105
Query: 123 EKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVK 182
+ ++ +S ND T + + + + L L L++T ++++ ++++
Sbjct: 106 K---------LHTGRSRNDQVVTDLRLW-MRQTCSTLSGLLWELIRTMVDRAEAERDVLF 155
Query: 183 IGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIG-GTAVGTGLNAHKEL 241
G THLQ A P+ +A L +++LE + + L +G G G L +EL
Sbjct: 156 PGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDREL 215
Query: 242 SEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGP 301
+ EL+ F + N A + D +A +L ++A D+ L
Sbjct: 216 ---LRAELN-FGAITL----NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDL-ILYCTK 266
Query: 302 RCGLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMG 341
+L+ GSS+MP K NP E + A +V G
Sbjct: 267 EFSFVQLS-DAYSTGSSLMPQKKNPDSLELIRSKAGRVFG 305
>pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 44.3 bits (103), Expect = 3e-05
Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 27/280 (9%)
Query: 66 LEKSQAIIKA-CDCILKG--ELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFR 122
LEK+ + KA D IL G ++ E+ ++ S + NE + E++G
Sbjct: 49 LEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHTANE---RRLKELIGATAG 105
Query: 123 EKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVK 182
+ ++ +S ND T + + + + L L L++T ++++ ++++
Sbjct: 106 K---------LHTGRSRNDQVVTDLRLW-MRQTCSTLSGLLWELIRTMVDRAEAERDVLF 155
Query: 183 IGRTHLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIG-GTAVGTGLNAHKEL 241
G THLQ A P+ +A L +++LE + + L +G G G L +EL
Sbjct: 156 PGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDREL 215
Query: 242 SEKVAEELSQFSGVKFVSAPNKFHALTSHDAIAYAHGAFKALAANLMKIANDIRWLASGP 301
+ EL+ F + N A + D +A +L ++A D+ L
Sbjct: 216 ---LRAELN-FGAITL----NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDL-ILYCTK 266
Query: 302 RCGLGELNIPENEPGSSIMPGKVNPTQCEAMTMVAVQVMG 341
+L+ GSS+MP K NP E + A +V G
Sbjct: 267 EFSFVQLS-DAYSTGSSLMPRKKNPDSLELIRSKAGRVFG 305
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 29.3 bits (64), Expect = 0.98
Identities = 19/49 (38%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Query: 152 VLEITHRLLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDA-TPLTLGQE 199
VL+ T RLLP+L ++ FKE +QF + + G + DA + +T QE
Sbjct: 54 VLDDTKRLLPTLYEKIREFKEDLEQFLKTYQ-GTEDVSDARSAITSAQE 101
>pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Acyl-Enzyme Complex
pdb|1QME|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 702
Score = 26.9 bits (58), Expect = 4.9
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 196 LGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVAEELSQFSGV 255
+ + F Y M E ++ L S +L++++ G A G G+ +S K E ++ G+
Sbjct: 74 VAEVFHKYLDMEESYVREQL-SQPNLKQVSFG--AKGNGITYANMMSIKKELEAAEVKGI 130
Query: 256 KFVSAPNK 263
F ++PN+
Sbjct: 131 DFTTSPNR 138
>pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 26.9 bits (58), Expect = 4.9
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 196 LGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVAEELSQFSGV 255
+ + F Y M E ++ L S +L++++ G A G G+ +S K E ++ G+
Sbjct: 47 VAEVFHKYLDMEESYVREQL-SQPNLKQVSFG--AKGNGITYANMMSIKKELEAAEVKGI 103
Query: 256 KFVSAPNK 263
F ++PN+
Sbjct: 104 DFTTSPNR 111
>pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 26.9 bits (58), Expect = 4.9
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 187 HLQDATPLTLGQEFSGYASMLEHSKQQILESLEHLRELAIGGTAVGTGLNAHKELSEKVA 246
+++DA + + F Y M E ++ L S +L++++ G G G+ ++ K
Sbjct: 48 YVEDAQFNKVAEVFHKYLDMEESYVREQL-SQPNLKQVSFGSK--GNGITYANMMAIKKE 104
Query: 247 EELSQFSGVKFVSAPNK 263
E ++ G+ F ++PN+
Sbjct: 105 LETAEVKGIDFTTSPNR 121
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,518,866
Number of Sequences: 13198
Number of extensions: 97783
Number of successful extensions: 304
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 23
length of query: 463
length of database: 2,899,336
effective HSP length: 91
effective length of query: 372
effective length of database: 1,698,318
effective search space: 631774296
effective search space used: 631774296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)