BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645940|ref|NP_208119.1| hypothetical protein
[Helicobacter pylori 26695]
(412 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 43 7e-05
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 30 0.38
pdb|1ASS| Apical Domain Of The Chaperonin From Thermoplas... 30 0.38
pdb|1A6D|B Chain B, Thermosome From T. Acidophilum >gi|4699... 29 0.86
pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome 29 1.1
pdb|1GIG|H Chain H, Igg1 Fab Fragment (Hc19) >gi|3212734|pd... 28 2.5
pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin 27 4.3
pdb|1CIS| Hybrid Protein Formed From Chymotrypsin Inhibit... 27 4.3
pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Com... 27 4.3
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain... 27 4.3
pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), ... 27 5.6
pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase... 26 7.3
pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-... 26 9.5
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 26 9.5
pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null... 26 9.5
pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-... 26 9.5
pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Repla... 26 9.5
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 42.7 bits (99), Expect = 7e-05
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 40/194 (20%)
Query: 102 SQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQL------------AISLMINGIENYK 149
SQ++ KK+ Q QM+DLE+Q + E + K QL ++I +N K
Sbjct: 943 SQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 150 NQQEIELLKTAIKNLENTLYQANHSS--------------SPNLIAIAKLEILKSQLEIK 195
+E +LL+ + +L L + + S + + K E + +LE
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 196 KNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEK 255
K LE S H + EL + EL + K +E+EL A+ARL++E
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAK-----KEEEL--------QAALARLEDET 1108
Query: 256 SQKDITLAKKSFLE 269
SQK+ L K LE
Sbjct: 1109 SQKNNALKKIRELE 1122
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 30.4 bits (67), Expect = 0.38
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 173 HSSSPNLIAIAKLEILKSQLEIKKNNLEEALSAS 206
HS P+++ AK+ ++ S LEIKK +E + S
Sbjct: 224 HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQIS 257
>pdb|1ASS| Apical Domain Of The Chaperonin From Thermoplasma Acidophilum
pdb|1ASX| Apical Domain Of The Chaperonin From Thermoplasma Acidophilum
Length = 159
Score = 30.4 bits (67), Expect = 0.38
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 173 HSSSPNLIAIAKLEILKSQLEIKKNNLEEALSAS 206
HS P+++ AK+ ++ S LEIKK +E + S
Sbjct: 12 HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQIS 45
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
Length = 543
Score = 29.3 bits (64), Expect = 0.86
Identities = 31/115 (26%), Positives = 50/115 (42%), Gaps = 15/115 (13%)
Query: 118 IDLEKQKKILELKKTKQQLAISLMINGIENYKNQ----QEIELLKTAIKNLENTLYQANH 173
I E K + EL+ K + + I+ K Q + +L+ I + E H
Sbjct: 175 ISYEAVKSVAELRDGKYYVDF----DNIQVVKKQGGAIDDTQLINGIIVDKEKV-----H 225
Query: 174 SSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGE--LAFKENELLSIAPK 226
P+++ AK+ +L + LEIKK + L SM + LA +EN L + K
Sbjct: 226 PGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDK 280
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/56 (33%), Positives = 29/56 (50%), Gaps = 2/56 (3%)
Query: 173 HSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGE--LAFKENELLSIAPK 226
H P+++ AK+ +L + LEIKK + L SM + LA +EN L + K
Sbjct: 12 HPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDK 67
>pdb|1GIG|H Chain H, Igg1 Fab Fragment (Hc19)
pdb|2VIS|B Chain B, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
pdb|2VIR|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|2VIT|B Chain B, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 221
Score = 27.7 bits (60), Expect = 2.5
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 242 TNYDIAI---ARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIAL 294
TNY+ A+ + ++ S+ + L KS D T +YY ++ +Y+YD+F A+
Sbjct: 57 TNYNSALMSRVSISKDNSKSQVFLKMKSLQTDD--TAMYYC-ARDFYDYDVFYYAM 109
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 26.9 bits (58), Expect = 4.3
Identities = 13/42 (30%), Positives = 21/42 (49%)
Query: 149 KNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKS 190
KNQQ EL +T ++ + T Y N +A+ K + L +
Sbjct: 124 KNQQTFELQETGVEGICQTTYVVQEGYRTNEMAVVKTKDLNN 165
>pdb|1CIS| Hybrid Protein Formed From Chymotrypsin Inhibitor-2 (Ci-2) From
(Hordeum Vulgare) And (Subtilisin Carlsberg) (Nmr, 15
Structures)
Length = 66
Score = 26.9 bits (58), Expect = 4.3
Identities = 15/56 (26%), Positives = 32/56 (56%), Gaps = 2/56 (3%)
Query: 341 ETLQKNLESINKIIKQNEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLS 396
E + K++E K+I Q++ AQI L+ ++ NAY D++ + + +L+ ++
Sbjct: 7 ELVGKSVEEAKKVILQDKPEAQIIVLEKQAVD--NAYAEYRIDRVRLAVDKLDNIA 60
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
Length = 555
Score = 26.9 bits (58), Expect = 4.3
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 105 VDLNGKKLTQSQMIDLEKQKKILELKKTKQQL---AISLMINGIENYKNQQEIELLKTAI 161
V+L+GK+ Q MID + +++T+Q + A+ + ++ + +++EI + TAI
Sbjct: 50 VELDGKRRDQFDMIDRFIADYAINVERTEQAMRLEAVEIARMLVDIHVSREEIIAITTAI 109
Query: 162 KNLENTLYQANHSSSPNLIAIAKLEILKSQ------LEIKKNNLEEALSASHYSMGELAF 215
+ A + ++A+ K+ ++ +K N ++ A A+ G F
Sbjct: 110 TPAKAVEVMAQMNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAA--EAGIRGF 167
Query: 216 KENE 219
E E
Sbjct: 168 SEQE 171
>pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 26.9 bits (58), Expect = 4.3
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 239 ISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYF---RSKQYYNYDMFSIALS 295
+S N+++ +D +K K+FL++ N+T + YF ++K + + AL
Sbjct: 89 LSGPNFEVVAINIDTRDPEKP-----KTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALG 143
Query: 296 IPLPI 300
+P +
Sbjct: 144 MPTSV 148
>pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1QEX|B Chain B, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
Length = 288
Score = 26.6 bits (57), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (74%)
Query: 369 KSNGDYNAYYNAFNDK 384
K N D+NA YNAF D+
Sbjct: 30 KINSDFNAIYNAFGDQ 45
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
Length = 345
Score = 26.2 bits (56), Expect = 7.3
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 343 LQKNLESINKIIKQNEKIAQIYALDLKSNG 372
++K+L+ +N+II N + ++ + +KS+G
Sbjct: 316 IEKSLDKLNEIISMNGDVTKLKTIVVKSSG 345
>pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M48|A Chain A, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M48|B Chain B, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M49|A Chain A, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M49|B Chain B, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M4C|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M4C|B Chain B, Crystal Structure Of Human Interleukin-2
Length = 133
Score = 25.8 bits (55), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 130 KKTKQQLA-----ISLMINGIENYKNQQEIELL 157
KKT+ QL + +++NGI NYKN + +L
Sbjct: 8 KKTQLQLEHLLLDLQMILNGINNYKNPKLTRML 40
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 25.8 bits (55), Expect = 9.5
Identities = 18/86 (20%), Positives = 45/86 (51%), Gaps = 2/86 (2%)
Query: 119 DLEKQKKILELKKTKQQLAISLMINGIENYKNQQEI--ELLKTAIKNLENTLYQANHSSS 176
D +++ ++ E K T + ++ + I+ ++ + + E L TA++ LE A+ S
Sbjct: 66 DAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125
Query: 177 PNLIAIAKLEILKSQLEIKKNNLEEA 202
+ ++ + + ++EI++ L+EA
Sbjct: 126 GMKVIESRAQKDEEKMEIQEIQLKEA 151
>pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null; Engineered: Yes;
Mutation: F42a
Length = 133
Score = 25.8 bits (55), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 130 KKTKQQLA-----ISLMINGIENYKNQQEIELL 157
KKT+ QL + +++NGI NYKN + +L
Sbjct: 8 KKTQLQLEHLLLDLQMILNGINNYKNPKLTRML 40
>pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-2 K43c Covalently
Modified At C43 With 2-[2-(2-Cyclohexyl-2-Guanidino-
Acetylamino)-Acetylamino]-N-(3-Mercapto-Propyl)-
Propionamide
Length = 133
Score = 25.8 bits (55), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 130 KKTKQQLA-----ISLMINGIENYKNQQEIELL 157
KKT+ QL + +++NGI NYKN + +L
Sbjct: 8 KKTQLQLEHLLLDLQMILNGINNYKNPKLTRML 40
>pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Replaced By Ala (C125a)
pdb|3INK|D Chain D, Interleukin 2 Mutant With Cys 125 Replaced By Ala (C125a)
Length = 133
Score = 25.8 bits (55), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 130 KKTKQQLA-----ISLMINGIENYKNQQEIELL 157
KKT+ QL + +++NGI NYKN + +L
Sbjct: 8 KKTQLQLEHLLLDLQMILNGINNYKNPKLTRML 40
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.130 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,979,801
Number of Sequences: 13198
Number of extensions: 73758
Number of successful extensions: 190
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 17
length of query: 412
length of database: 2,899,336
effective HSP length: 90
effective length of query: 322
effective length of database: 1,711,516
effective search space: 551108152
effective search space used: 551108152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)