BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645943|ref|NP_208122.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(115 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton He... 25 2.8
pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton He... 25 2.8
pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Hea... 24 3.7
pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, ... 24 3.7
pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 24 3.7
pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 24 3.7
pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, ... 24 3.7
pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 24 3.7
pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of B... 24 3.7
pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, ... 24 3.7
pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 24 3.7
pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-... 24 3.7
pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Co... 24 3.7
pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton He... 24 3.7
pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 24 3.7
pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron R... 24 4.8
pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron R... 24 4.8
pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-T... 23 8.2
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 24.6 bits (52), Expect = 2.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 87 WPFMVVNDAGAPKVQVEYKGETKS 110
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 24.6 bits (52), Expect = 2.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 87 WPFMVVNDAGAPKVQVEYKGETKS 110
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Asn
(D206n)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Ser (D10s)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Asn
(D199n)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Glu (T204e)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Ser
(E175s)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With
Cys 17 Replaced By Lys
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Gln
(E175q)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Val (T204v)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3)
pdb|1NGJ| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Mg
pdb|1NGI| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Ca
pdb|1HPM| 44k Atpase Fragment (N-Terminal) Of 7okda Heat-Shock Cognate
Protein (E.C.3.6.1.3)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 109 WPFMVVNDAGRPKVQVEYKGETKS 132
>pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Ser
(D206s)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Asn (D10n)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 87 WPFMVVNDAGRPKVQVEYKGETKS 110
>pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Ser
(D199s)
Length = 386
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 22 WPFMVFNAKNPPNDFVRYLGRALS 45
WPFMV N P V Y G S
Sbjct: 90 WPFMVVNDAGRPKVQVEYKGETKS 113
>pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 421
Score = 23.9 bits (50), Expect = 4.8
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 9 ILVIILTTYFTRIWPFMVFNAKNPPNDFVRYLGRALSCSVIGMLVIYCFK------DIHI 62
+LV++ T YF +W F+ +N + Y SCSV+ M F+ +
Sbjct: 204 VLVLVNTIYFKGLWK-SKFSPENTRKELF-YKADGESCSVLMMYQESKFRYRRVAESTQV 261
Query: 63 LKPPYGINEITAFL 76
L+ P+ ++IT L
Sbjct: 262 LELPFKGDDITMVL 275
>pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 411
Score = 23.9 bits (50), Expect = 4.8
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 9 ILVIILTTYFTRIWPFMVFNAKNPPNDFVRYLGRALSCSVIGMLVIYCFK------DIHI 62
+LV++ T YF +W F+ +N + Y SCSV+ M F+ +
Sbjct: 191 VLVLVNTIYFKGLWK-SKFSPENTRKELF-YKADGESCSVLMMYQESKFRYRRVAESTQV 248
Query: 63 LKPPYGINEITAFL 76
L+ P+ ++IT L
Sbjct: 249 LELPFKGDDITMVL 262
>pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-Terminal Domain
Length = 380
Score = 23.1 bits (48), Expect = 8.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 22 WPFMVFNAKNPPNDFVRYLG--RALSCSVIGMLVIYCFKDI 60
WPF V N + P V Y G +A I +V+ K+I
Sbjct: 88 WPFQVINDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEI 128
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.337 0.150 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,620
Number of Sequences: 13198
Number of extensions: 20342
Number of successful extensions: 49
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 25
length of query: 115
length of database: 2,899,336
effective HSP length: 76
effective length of query: 39
effective length of database: 1,896,288
effective search space: 73955232
effective search space used: 73955232
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 48 (23.1 bits)